Factsheet for Solyc03g123940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112850.2.1	Tomato	cytosol	80.22	69.52
Solyc06g071530.2.1	Tomato	nucleus	78.02	67.62
KRH10493	Soybean	nucleus	76.92	66.67
KRH42207	Soybean	cytosol	76.92	66.67
KRH43933	Soybean	cytosol	76.92	66.67
KRH58331	Soybean	cytosol	76.92	66.67
EER90549	Sorghum	cytosol	74.73	64.76
Bra033491.1-P	Field mustard	cytosol	74.73	64.76
Bra014945.1-P	Field mustard	cytosol	74.73	64.76
Bra010760.1-P	Field mustard	cytosol	74.73	64.76
Bra001911.1-P	Field mustard	cytosol	74.73	64.76
Os07t0523150-00	Rice	cytosol	73.63	63.81
Os07t0523100-00	Rice	plastid	73.63	63.81
Os07t0450000-01	Rice	cytosol	73.63	63.81
Zm00001d006510_P001	Maize	plasma membrane	73.63	63.81
Zm00001d021652_P001	Maize	cytosol	73.63	63.81
EER96597	Sorghum	cytosol	73.63	63.81
AT3G23390.1	Thale cress	cytosol	73.63	63.81
CDX90258	Canola	extracellular	73.63	63.21
Os07t0523700-02	Rice	cytosol	65.93	63.16
Os07t0523500-02	Rice	cytosol	65.93	63.16
Os07t0523300-01	Rice	cytosol	65.93	63.16
TraesCS5B01G320300.1	Wheat	cytosol	72.53	62.86
TraesCS2D01G226100.1	Wheat	cytosol	72.53	62.86
TraesCS5A01G320100.1	Wheat	cytosol	72.53	62.86
TraesCS5A01G417600.1	Wheat	cytosol	72.53	62.86
TraesCS7D01G443900.1	Wheat	cytosol	72.53	62.86
TraesCS7A01G454800.1	Wheat	cytosol	72.53	62.86
TraesCS5D01G425600.1	Wheat	cytosol	72.53	62.86
TraesCS7A01G454700.1	Wheat	cytosol	72.53	62.86
CDX92983	Canola	cytosol	73.63	61.47
VIT_01s0011g02090.t01	Wine grape	cytosol	78.02	57.26
GSMUA_Achr9P24920_001	Banana	cytosol	69.23	55.75
CDY49411	Canola	cytosol	74.73	53.54
CDY12759	Canola	cytosol	74.73	53.54
GSMUA_Achr6P29350_001	Banana	extracellular	71.43	52.42
CDY12064	Canola	cytosol	74.73	52.31
OQU90027	Sorghum	cytosol	54.95	51.02
CDX77519	Canola	cytosol	74.73	50.0
CDX94859	Canola	cytosol	74.73	50.0
CDY18124	Canola	cytosol	74.73	49.63
TraesCS5B01G419800.1	Wheat	cytosol	71.43	49.62
GSMUA_Achr6P00480_001	Banana	endoplasmic reticulum, extracellular	70.33	48.85
Bra023728.1-P	Field mustard	cytosol	40.66	46.84
CDY09010	Canola	cytosol, mitochondrion	74.73	44.44
Zm00001d019562_P003	Maize	cytosol	72.53	43.42
CDX85095	Canola	cytosol, plastid	74.73	42.77
TraesCS2B01G246000.1	Wheat	golgi	72.53	42.04
HORVU5Hr1G081590.1	Barley	cytosol, plastid	72.53	40.74
HORVU5Hr1G101600.1	Barley	cytosol, nucleus, plastid	72.53	40.24
HORVU7Hr1G104300.1	Barley	nucleus	72.53	38.37
GSMUA_Achr9P11710_001	Banana	cytosol	71.43	37.14
HORVU2Hr1G045920.1	Barley	cytosol, plastid	72.53	36.46
AT4G14320.2	Thale cress	cytosol	59.34	35.06
KXG25018	Sorghum	mitochondrion	29.67	34.18
OQU83445	Sorghum	mitochondrion	27.47	30.86
KXG28543	Sorghum	mitochondrion	31.87	26.61
TraesCS5D01G326000.2	Wheat	cytosol, nucleus	59.34	25.47
PGSC0003DMT400021706	Potato	nucleus	74.73	23.69
Zm00001d028202_P001	Maize	cytosol	25.27	23.23

Protein Annotations

Gene3D:3.10.450.80	MapMan:35.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
UniProt:K4BN92	PFAM:PD002841	PFAM:PF00935	PANTHER:PTHR10369	InterPro:Ribosomal_L44e	InterPro:Ribosomal_zn-bd
SUPFAM:SSF57829	EnsemblPlantsGene:Solyc03g123940.1	EnsemblPlants:Solyc03g123940.1.1	UniParc:UPI0002765DFF	:	:

Description

No Description!

Coordinates

chr3:+:70639844..70640162

Molecular Weight (calculated)

10491.1 Da

IEP (calculated)

11.026

GRAVY (calculated)

-1.099

Length

91 amino acids

Sequence
(BLAST)

1: MVSVPNTYKT YCKSKERKKH TLHKVTQYKK GKDRLAAQDK AHLPPKKAKT TKKIVMRLQC RGCKHVSQHP SKRCKHFVIG EDKKGKGTSL F

Best Arabidopsis Sequence Match ( AT4G14320.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.