Factsheet for PGSC0003DMT400021706

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069671	Potato	cytosol	33.8	92.38
PGSC0003DMT400046603	Potato	cytosol	33.8	92.38
KRH10493	Soybean	nucleus	32.75	89.52
KRH42207	Soybean	cytosol	32.75	89.52
KRH43933	Soybean	cytosol	32.75	89.52
KRH58331	Soybean	cytosol	32.75	89.52
EER90549	Sorghum	cytosol	32.06	87.62
Bra033491.1-P	Field mustard	cytosol	32.06	87.62
Bra014945.1-P	Field mustard	cytosol	32.06	87.62
Bra010760.1-P	Field mustard	cytosol	32.06	87.62
Bra001911.1-P	Field mustard	cytosol	32.06	87.62
CDX90258	Canola	extracellular	32.06	86.79
Os07t0523150-00	Rice	cytosol	31.71	86.67
Os07t0523100-00	Rice	plastid	31.71	86.67
Os07t0450000-01	Rice	cytosol	31.71	86.67
Zm00001d006510_P001	Maize	plasma membrane	31.71	86.67
Zm00001d021652_P001	Maize	cytosol	31.71	86.67
AT3G23390.1	Thale cress	cytosol	31.71	86.67
EER96597	Sorghum	cytosol	31.71	86.67
Os07t0523700-02	Rice	cytosol	28.57	86.32
Os07t0523300-01	Rice	cytosol	28.57	86.32
Os07t0523500-02	Rice	cytosol	28.57	86.32
TraesCS7A01G454700.1	Wheat	cytosol	31.36	85.71
TraesCS5D01G425600.1	Wheat	cytosol	31.36	85.71
TraesCS5B01G320300.1	Wheat	cytosol	31.36	85.71
TraesCS7A01G454800.1	Wheat	cytosol	31.36	85.71
TraesCS5A01G417600.1	Wheat	cytosol	31.36	85.71
TraesCS5A01G320100.1	Wheat	cytosol	31.36	85.71
TraesCS2D01G226100.1	Wheat	cytosol	31.36	85.71
TraesCS7D01G443900.1	Wheat	cytosol	31.36	85.71
CDX92983	Canola	cytosol	32.06	84.4
GSMUA_Achr9P24920_001	Banana	cytosol	31.36	79.65
VIT_01s0011g02090.t01	Wine grape	cytosol	33.8	78.23
Bra023728.1-P	Field mustard	cytosol	20.91	75.95
CDY49411	Canola	cytosol	33.45	75.59
CDY12759	Canola	cytosol	33.45	75.59
OQU90027	Sorghum	cytosol	25.78	75.51
Solyc03g123940.1.1	Tomato	cytosol	23.69	74.73
CDY12064	Canola	cytosol	33.45	73.85
GSMUA_Achr6P29350_001	Banana	extracellular	31.71	73.39
CDX94859	Canola	cytosol	34.15	72.06
CDY18124	Canola	cytosol	33.8	70.8
CDX77519	Canola	cytosol	33.45	70.59
TraesCS5B01G419800.1	Wheat	cytosol	31.36	68.7
GSMUA_Achr6P00480_001	Banana	endoplasmic reticulum, extracellular	31.36	68.7
PGSC0003DMT400050885	Potato	cytosol	34.49	64.29
CDX85095	Canola	cytosol, plastid	34.84	62.89
CDY09010	Canola	cytosol, mitochondrion	33.1	62.09
Zm00001d019562_P003	Maize	cytosol	31.71	59.87
TraesCS2B01G246000.1	Wheat	golgi	32.4	59.24
HORVU5Hr1G101600.1	Barley	cytosol, nucleus, plastid	33.8	59.15
HORVU7Hr1G104300.1	Barley	nucleus	34.49	57.56
HORVU5Hr1G081590.1	Barley	cytosol, plastid	32.4	57.41
GSMUA_Achr9P11710_001	Banana	cytosol	33.1	54.29
HORVU2Hr1G045920.1	Barley	cytosol, plastid	33.8	53.59
AT4G14320.2	Thale cress	cytosol	26.83	50.0
Zm00001d028202_P001	Maize	cytosol	14.63	42.42
KXG25018	Sorghum	mitochondrion	11.15	40.51
OQU83445	Sorghum	mitochondrion	10.45	37.04
TraesCS5D01G326000.2	Wheat	cytosol, nucleus	27.18	36.79
KXG28543	Sorghum	mitochondrion	12.54	33.03

Protein Annotations

MapMan:17.1.2.1.38	Gene3D:3.10.450.80	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	UniProt:M1AFK7
PFAM:PD002841	PFAM:PF00935	EnsemblPlantsGene:PGSC0003DMG400008422	PGSC:PGSC0003DMG400008422	EnsemblPlants:PGSC0003DMT400021706	PANTHER:PTHR10369
InterPro:Ribosomal_L44e	InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829	UniParc:UPI0002950A26	SEG:seg	:

Description

Ribosomal protein L41 [Source:PGSC_GENE;Acc:PGSC0003DMG400008422]

Coordinates

chr11:+:17823937..17831649

Molecular Weight (calculated)

32656.0 Da

IEP (calculated)

5.212

GRAVY (calculated)

-1.017

Length

287 amino acids

Sequence
(BLAST)

001: MYAAWGTGSE MYEEDSDGIA LMAIEESEPE PDSDSKEKEE DEEISEASTD NATEQEKETG RLYENDEISI HTLNNQEENL ERVPEEEQTE TTDGEETNGH
101: SEGEPISSKE QVHLSYEDDD EIPIVQLIPK RLRSRLSTQS VQPLAMILPE AQESPISNTS ELVQLNGDCA LWYFCLTSRL AKIVNVPKTK KTYCKSKECK
201: NHTLHKVIQY KKGKDSLASQ EKRRYDRKQS GYGGQTKPVF HKKAKTTKKI VLRLQFQGCK HVSQHPIKRF KHFEIGGDKK GKGTSLF

Best Arabidopsis Sequence Match ( AT4G14320.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.