Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001911.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| Bra010760.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| Bra033491.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| AT3G23390.1 | Thale cress | cytosol | 96.19 | 96.19 |
| Solyc06g071530.2.1 | Tomato | nucleus | 95.24 | 95.24 |
| Solyc03g112850.2.1 | Tomato | cytosol | 95.24 | 95.24 |
| PGSC0003DMT400069671 | Potato | cytosol | 95.24 | 95.24 |
| PGSC0003DMT400046603 | Potato | cytosol | 95.24 | 95.24 |
| VIT_13s0064g00880.t01 | Wine grape | cytosol | 94.29 | 94.29 |
| KRH58331 | Soybean | cytosol | 93.33 | 93.33 |
| KRH43933 | Soybean | cytosol | 93.33 | 93.33 |
| KRH42207 | Soybean | cytosol | 93.33 | 93.33 |
| KRH10493 | Soybean | nucleus | 93.33 | 93.33 |
| Bra023728.1-P | Field mustard | cytosol | 62.86 | 83.54 |
| VIT_01s0011g02090.t01 | Wine grape | cytosol | 93.33 | 79.03 |
| Solyc03g123940.1.1 | Tomato | cytosol | 64.76 | 74.73 |
| CDX85095 | Canola | cytosol, plastid | 100.0 | 66.04 |
| PGSC0003DMT400050885 | Potato | cytosol | 95.24 | 64.94 |
| PGSC0003DMT400021706 | Potato | nucleus | 87.62 | 32.06 |
| VIT_01s0011g02080.t01 | Wine grape | nucleus, plastid | 93.33 | 27.84 |
Protein Annotations
| MapMan:17.1.2.1.38 | Gene3D:3.10.450.80 | ProteinID:AAK94425 | ProteinID:AAK94425.1 | EMBL:AF398144 | EnsemblPlantsGene:Bra014945 |
| EnsemblPlants:Bra014945.1 | EnsemblPlants:Bra014945.1-P | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | UniProt:M4DEM3 |
| PFAM:PD002841 | PFAM:PF00935 | ScanProsite:PS01172 | PANTHER:PTHR10369 | InterPro:Ribosomal_L44e | InterPro:Ribosomal_zn-bd |
| SUPFAM:SSF57829 | UniParc:UPI000254074B | SEG:seg | : | : | : |
Description
AT3G23390 (E=5e-047) | 60S ribosomal protein L36a/L44 (RPL36aA)
Coordinates
chrA07:-:5033548..5034622
Molecular Weight (calculated)
12125.0 Da
IEP (calculated)
10.999
GRAVY (calculated)
-1.197
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNIPKTKKT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQTCKHF SQHSIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
Arabidopsis Description
Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.