Factsheet for Solyc06g071530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112850.2.1	Tomato	cytosol	98.1	98.1
EER90549	Sorghum	cytosol	96.19	96.19
Zm00001d006510_P001	Maize	plasma membrane	95.24	95.24
Bra001911.1-P	Field mustard	cytosol	95.24	95.24
Bra010760.1-P	Field mustard	cytosol	95.24	95.24
Bra014945.1-P	Field mustard	cytosol	95.24	95.24
AT3G23390.1	Thale cress	cytosol	95.24	95.24
Bra033491.1-P	Field mustard	cytosol	95.24	95.24
Zm00001d021652_P001	Maize	cytosol	95.24	95.24
Os07t0450000-01	Rice	cytosol	95.24	95.24
Os07t0523100-00	Rice	plastid	95.24	95.24
EER96597	Sorghum	cytosol	95.24	95.24
Os07t0523150-00	Rice	cytosol	95.24	95.24
Os07t0523700-02	Rice	cytosol	85.71	94.74
Os07t0523300-01	Rice	cytosol	85.71	94.74
Os07t0523500-02	Rice	cytosol	85.71	94.74
TraesCS2D01G226100.1	Wheat	cytosol	94.29	94.29
TraesCS5A01G320100.1	Wheat	cytosol	94.29	94.29
TraesCS7A01G454800.1	Wheat	cytosol	94.29	94.29
TraesCS5A01G417600.1	Wheat	cytosol	94.29	94.29
TraesCS7A01G454700.1	Wheat	cytosol	94.29	94.29
TraesCS5B01G320300.1	Wheat	cytosol	94.29	94.29
TraesCS5D01G425600.1	Wheat	cytosol	94.29	94.29
TraesCS7D01G443900.1	Wheat	cytosol	94.29	94.29
CDX90258	Canola	extracellular	94.29	93.4
CDX92983	Canola	cytosol	94.29	90.83
GSMUA_Achr9P24920_001	Banana	cytosol	91.43	84.96
OQU90027	Sorghum	cytosol	75.24	80.61
Bra023728.1-P	Field mustard	cytosol	60.0	79.75
GSMUA_Achr6P29350_001	Banana	extracellular	93.33	79.03
CDY49411	Canola	cytosol	95.24	78.74
CDY12759	Canola	cytosol	95.24	78.74
Solyc03g123940.1.1	Tomato	cytosol	67.62	78.02
CDY12064	Canola	cytosol	95.24	76.92
TraesCS5B01G419800.1	Wheat	cytosol	93.33	74.81
GSMUA_Achr6P00480_001	Banana	endoplasmic reticulum, extracellular	92.38	74.05
CDX94859	Canola	cytosol	95.24	73.53
CDX77519	Canola	cytosol	95.24	73.53
CDY18124	Canola	cytosol	95.24	72.99
CDY09010	Canola	cytosol, mitochondrion	95.24	65.36
Zm00001d019562_P003	Maize	cytosol	94.29	65.13
TraesCS2B01G246000.1	Wheat	golgi	94.29	63.06
CDX85095	Canola	cytosol, plastid	95.24	62.89
HORVU5Hr1G081590.1	Barley	cytosol, plastid	94.29	61.11
HORVU5Hr1G101600.1	Barley	cytosol, nucleus, plastid	94.29	60.37
HORVU7Hr1G104300.1	Barley	nucleus	94.29	57.56
GSMUA_Achr9P11710_001	Banana	cytosol	93.33	56.0
AT4G14320.2	Thale cress	cytosol	81.9	55.84
HORVU2Hr1G045920.1	Barley	cytosol, plastid	94.29	54.7
Zm00001d028202_P001	Maize	cytosol	44.76	47.47
KXG25018	Sorghum	mitochondrion	33.33	44.3
TraesCS5D01G326000.2	Wheat	cytosol, nucleus	80.95	40.09
OQU83445	Sorghum	mitochondrion	28.57	37.04
KXG28543	Sorghum	mitochondrion	35.24	33.95

Protein Annotations

MapMan:17.1.2.1.38	Gene3D:3.10.450.80	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
GO:GO:0030529	UniProt:K4C8M5	PFAM:PD002841	PFAM:PF00935	ScanProsite:PS01172	PANTHER:PTHR10369
InterPro:Ribosomal_L44e	InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829	EnsemblPlantsGene:Solyc06g071530.2	EnsemblPlants:Solyc06g071530.2.1	UniParc:UPI0002767108
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:44041100..44043225

Molecular Weight (calculated)

12064.0 Da

IEP (calculated)

10.999

GRAVY (calculated)

-1.191

Length

105 amino acids

Sequence
(BLAST)

001: MVNVPKTKKT YCKSKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHM SQHPIKRCKH FEIGGDKKGK
101: GTSLF

Best Arabidopsis Sequence Match ( AT4G14320.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.