CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28543	Sorghum	mitochondrion	96.3	71.56
KXG25018	Sorghum	mitochondrion	45.68	46.84
OQU90027	Sorghum	cytosol	39.51	32.65
CDX90258	Canola	extracellular	40.74	31.13
EER96597	Sorghum	cytosol	39.51	30.48
CDX92983	Canola	cytosol	40.74	30.28
EER90549	Sorghum	cytosol	38.27	29.52
VIT_13s0064g00880.t01	Wine grape	cytosol	37.04	28.57
Solyc06g071530.2.1	Tomato	nucleus	37.04	28.57
Solyc03g112850.2.1	Tomato	cytosol	37.04	28.57
PGSC0003DMT400069671	Potato	cytosol	37.04	28.57
PGSC0003DMT400046603	Potato	cytosol	37.04	28.57
KRH43933	Soybean	cytosol	35.8	27.62
KRH58331	Soybean	cytosol	35.8	27.62
KRH42207	Soybean	cytosol	35.8	27.62
KRH10493	Soybean	nucleus	35.8	27.62
Solyc03g123940.1.1	Tomato	cytosol	30.86	27.47
CDY12064	Canola	cytosol	41.98	26.15
CDY49411	Canola	cytosol	40.74	25.98
CDY12759	Canola	cytosol	40.74	25.98
CDX94859	Canola	cytosol	43.21	25.74
VIT_01s0011g02090.t01	Wine grape	cytosol	38.27	25.0
CDX77519	Canola	cytosol	40.74	24.26
CDY18124	Canola	cytosol	40.74	24.09
CDY09010	Canola	cytosol, mitochondrion	43.21	22.88
CDX85095	Canola	cytosol, plastid	43.21	22.01
PGSC0003DMT400050885	Potato	cytosol	40.74	21.43
AT4G14320.2	Thale cress	cytosol	38.27	20.13
PGSC0003DMT400021706	Potato	nucleus	37.04	10.45
VIT_01s0011g02080.t01	Wine grape	nucleus, plastid	43.21	9.94

Protein Annotations

Gene3D:3.10.450.80	MapMan:35.2	UniProt:A0A1Z5RJ33	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlants:OQU83445
ProteinID:OQU83445	ProteinID:OQU83445.1	PFAM:PD002841	PANTHER:PTHR10369	PANTHER:PTHR10369:SF9	InterPro:Ribosomal_L44e
InterPro:Ribosomal_zn-bd	EnsemblPlantsGene:SORBI_3005G117001	SUPFAM:SSF57829	UniParc:UPI000B8BA647	:	:

Description

hypothetical protein

Coordinates

chr5:+:51565210..51567255

Molecular Weight (calculated)

8836.6 Da

IEP (calculated)

10.307

GRAVY (calculated)

-0.640

Length

81 amino acids

Sequence
(BLAST)

1: MAAVVALRPR MRRGDAFTAL EEAVSSARGC TPTPSSTKAK DLSVNIPKTK KTYCKNNECW KHTLHKVTQC KKGDDSLSAQ A

Best Arabidopsis Sequence Match ( AT4G14320.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.