CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28543	Sorghum	mitochondrion	81.01	58.72
OQU83445	Sorghum	mitochondrion	46.84	45.68
OQU90027	Sorghum	cytosol	44.3	35.71
CDX90258	Canola	extracellular	46.84	34.91
EER96597	Sorghum	cytosol	45.57	34.29
CDX92983	Canola	cytosol	46.84	33.95
VIT_13s0064g00880.t01	Wine grape	cytosol	44.3	33.33
Solyc06g071530.2.1	Tomato	nucleus	44.3	33.33
Solyc03g112850.2.1	Tomato	cytosol	44.3	33.33
PGSC0003DMT400069671	Potato	cytosol	44.3	33.33
PGSC0003DMT400046603	Potato	cytosol	44.3	33.33
EER90549	Sorghum	cytosol	44.3	33.33
KRH43933	Soybean	cytosol	43.04	32.38
KRH58331	Soybean	cytosol	43.04	32.38
KRH42207	Soybean	cytosol	43.04	32.38
KRH10493	Soybean	nucleus	43.04	32.38
CDY12064	Canola	cytosol	49.37	30.0
CDY49411	Canola	cytosol	48.1	29.92
CDY12759	Canola	cytosol	48.1	29.92
Solyc03g123940.1.1	Tomato	cytosol	34.18	29.67
VIT_01s0011g02090.t01	Wine grape	cytosol	45.57	29.03
CDX94859	Canola	cytosol	49.37	28.68
CDX77519	Canola	cytosol	46.84	27.21
CDY18124	Canola	cytosol	46.84	27.01
CDY09010	Canola	cytosol, mitochondrion	46.84	24.18
AT4G14320.2	Thale cress	cytosol	45.57	23.38
PGSC0003DMT400050885	Potato	cytosol	45.57	23.38
CDX85095	Canola	cytosol, plastid	46.84	23.27
PGSC0003DMT400021706	Potato	nucleus	40.51	11.15
VIT_01s0011g02080.t01	Wine grape	nucleus, plastid	44.3	9.94

Protein Annotations

Gene3D:3.10.450.80	MapMan:35.2	UniProt:A0A1B6PH71	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlants:KXG25018
ProteinID:KXG25018	ProteinID:KXG25018.1	PFAM:PD002841	PANTHER:PTHR10369	PANTHER:PTHR10369:SF9	InterPro:Ribosomal_L44e
InterPro:Ribosomal_zn-bd	EnsemblPlantsGene:SORBI_3007G110500	SUPFAM:SSF57829	UniParc:UPI00081AC924	:	:

Description

hypothetical protein

Coordinates

chr7:-:40048100..40050362

Molecular Weight (calculated)

9384.6 Da

IEP (calculated)

10.377

GRAVY (calculated)

-0.363

Length

79 amino acids

Sequence
(BLAST)

1: MVAALVLRQR LIAVNIRKTK KTYCKNNECW KHTLHKVTQC KKGDDSLSAQ AWKQLAYIEL RGKEVARRWI LYVITYYEV

Best Arabidopsis Sequence Match ( AT2G42540.2 )
(BLAST)

001: MAMSFSGAVL TGMASSFHSG AKQSSFGAVR VGQKTQFVVV SQRKKSLIYA AKGDGNILDD LNEATKKASD FVTDKTKEAL ADGEKAKDYV VEKNSETADT
101: LGKEAEKAAA YVEEKGKEAA NKAAEFAEGK AGEAKDATK

Arabidopsis Description

COR15AProtein COLD-REGULATED 15A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42512]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.