Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER96597 | Sorghum | cytosol | 97.14 | 97.14 |
| VIT_13s0064g00880.t01 | Wine grape | cytosol | 96.19 | 96.19 |
| Solyc06g071530.2.1 | Tomato | nucleus | 96.19 | 96.19 |
| Solyc03g112850.2.1 | Tomato | cytosol | 95.24 | 95.24 |
| PGSC0003DMT400069671 | Potato | cytosol | 95.24 | 95.24 |
| PGSC0003DMT400046603 | Potato | cytosol | 95.24 | 95.24 |
| KRH58331 | Soybean | cytosol | 94.29 | 94.29 |
| KRH43933 | Soybean | cytosol | 94.29 | 94.29 |
| KRH42207 | Soybean | cytosol | 94.29 | 94.29 |
| KRH10493 | Soybean | nucleus | 94.29 | 94.29 |
| CDX90258 | Canola | extracellular | 93.33 | 92.45 |
| CDX92983 | Canola | cytosol | 93.33 | 89.91 |
| OQU90027 | Sorghum | cytosol | 77.14 | 82.65 |
| VIT_01s0011g02090.t01 | Wine grape | cytosol | 95.24 | 80.65 |
| CDY12759 | Canola | cytosol | 94.29 | 77.95 |
| CDY49411 | Canola | cytosol | 94.29 | 77.95 |
| CDY12064 | Canola | cytosol | 94.29 | 76.15 |
| Solyc03g123940.1.1 | Tomato | cytosol | 64.76 | 74.73 |
| CDX77519 | Canola | cytosol | 94.29 | 72.79 |
| CDX94859 | Canola | cytosol | 94.29 | 72.79 |
| CDY18124 | Canola | cytosol | 94.29 | 72.26 |
| PGSC0003DMT400050885 | Potato | cytosol | 95.24 | 64.94 |
| CDY09010 | Canola | cytosol, mitochondrion | 94.29 | 64.71 |
| CDX85095 | Canola | cytosol, plastid | 94.29 | 62.26 |
| KXG25018 | Sorghum | mitochondrion | 33.33 | 44.3 |
| OQU83445 | Sorghum | mitochondrion | 29.52 | 38.27 |
| KXG28543 | Sorghum | mitochondrion | 35.24 | 33.95 |
| PGSC0003DMT400021706 | Potato | nucleus | 87.62 | 32.06 |
| VIT_01s0011g02080.t01 | Wine grape | nucleus, plastid | 95.24 | 28.41 |
Protein Annotations
| MapMan:17.1.2.1.38 | Gene3D:3.10.450.80 | EntrezGene:8080172 | UniProt:C5WT25 | EnsemblPlants:EER90549 | ProteinID:EER90549 |
| ProteinID:EER90549.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 |
| PFAM:PD002841 | PFAM:PF00935 | ScanProsite:PS01172 | PANTHER:PTHR10369 | InterPro:Ribosomal_L44e | InterPro:Ribosomal_zn-bd |
| EnsemblPlantsGene:SORBI_3001G018800 | SUPFAM:SSF57829 | unigene:Sbi.19417 | UniParc:UPI0001A82559 | RefSeq:XP_002463551.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:1567076..1568503
Molecular Weight (calculated)
12123.0 Da
IEP (calculated)
10.941
GRAVY (calculated)
-1.248
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNVPKTKKT YCKNKECRKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL KLQCQSCKHY SQHPIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
Arabidopsis Description
Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.