Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069671 | Potato | cytosol | 100.0 | 100.0 |
| Solyc03g112850.2.1 | Tomato | cytosol | 100.0 | 100.0 |
| KRH43933 | Soybean | cytosol | 97.14 | 97.14 |
| KRH58331 | Soybean | cytosol | 97.14 | 97.14 |
| KRH42207 | Soybean | cytosol | 97.14 | 97.14 |
| KRH10493 | Soybean | nucleus | 97.14 | 97.14 |
| EER90549 | Sorghum | cytosol | 95.24 | 95.24 |
| Bra033491.1-P | Field mustard | cytosol | 95.24 | 95.24 |
| Bra014945.1-P | Field mustard | cytosol | 95.24 | 95.24 |
| Bra010760.1-P | Field mustard | cytosol | 95.24 | 95.24 |
| Bra001911.1-P | Field mustard | cytosol | 95.24 | 95.24 |
| Zm00001d006510_P001 | Maize | plasma membrane | 94.29 | 94.29 |
| Zm00001d021652_P001 | Maize | cytosol | 94.29 | 94.29 |
| Os07t0450000-01 | Rice | cytosol | 94.29 | 94.29 |
| Os07t0523100-00 | Rice | plastid | 94.29 | 94.29 |
| Os07t0523150-00 | Rice | cytosol | 94.29 | 94.29 |
| EER96597 | Sorghum | cytosol | 94.29 | 94.29 |
| AT3G23390.1 | Thale cress | cytosol | 94.29 | 94.29 |
| Os07t0523500-02 | Rice | cytosol | 84.76 | 93.68 |
| Os07t0523300-01 | Rice | cytosol | 84.76 | 93.68 |
| Os07t0523700-02 | Rice | cytosol | 84.76 | 93.68 |
| CDX90258 | Canola | extracellular | 94.29 | 93.4 |
| TraesCS7A01G454800.1 | Wheat | cytosol | 93.33 | 93.33 |
| TraesCS2D01G226100.1 | Wheat | cytosol | 93.33 | 93.33 |
| TraesCS5A01G320100.1 | Wheat | cytosol | 93.33 | 93.33 |
| TraesCS7D01G443900.1 | Wheat | cytosol | 93.33 | 93.33 |
| TraesCS5A01G417600.1 | Wheat | cytosol | 93.33 | 93.33 |
| TraesCS5B01G320300.1 | Wheat | cytosol | 93.33 | 93.33 |
| TraesCS7A01G454700.1 | Wheat | cytosol | 93.33 | 93.33 |
| TraesCS5D01G425600.1 | Wheat | cytosol | 93.33 | 93.33 |
| CDX92983 | Canola | cytosol | 94.29 | 90.83 |
| GSMUA_Achr9P24920_001 | Banana | cytosol | 90.48 | 84.07 |
| Bra023728.1-P | Field mustard | cytosol | 60.0 | 79.75 |
| OQU90027 | Sorghum | cytosol | 74.29 | 79.59 |
| CDY49411 | Canola | cytosol | 95.24 | 78.74 |
| CDY12759 | Canola | cytosol | 95.24 | 78.74 |
| GSMUA_Achr6P29350_001 | Banana | extracellular | 92.38 | 78.23 |
| CDY12064 | Canola | cytosol | 95.24 | 76.92 |
| TraesCS5B01G419800.1 | Wheat | cytosol | 92.38 | 74.05 |
| CDX77519 | Canola | cytosol | 95.24 | 73.53 |
| CDX94859 | Canola | cytosol | 95.24 | 73.53 |
| GSMUA_Achr6P00480_001 | Banana | endoplasmic reticulum, extracellular | 91.43 | 73.28 |
| CDY18124 | Canola | cytosol | 95.24 | 72.99 |
| PGSC0003DMT400050885 | Potato | cytosol | 100.0 | 68.18 |
| CDY09010 | Canola | cytosol, mitochondrion | 95.24 | 65.36 |
| Zm00001d019562_P003 | Maize | cytosol | 93.33 | 64.47 |
| CDX85095 | Canola | cytosol, plastid | 95.24 | 62.89 |
| TraesCS2B01G246000.1 | Wheat | golgi | 93.33 | 62.42 |
| HORVU5Hr1G081590.1 | Barley | cytosol, plastid | 93.33 | 60.49 |
| HORVU5Hr1G101600.1 | Barley | cytosol, nucleus, plastid | 93.33 | 59.76 |
| HORVU7Hr1G104300.1 | Barley | nucleus | 93.33 | 56.98 |
| GSMUA_Achr9P11710_001 | Banana | cytosol | 92.38 | 55.43 |
| AT4G14320.2 | Thale cress | cytosol | 80.95 | 55.19 |
| HORVU2Hr1G045920.1 | Barley | cytosol, plastid | 93.33 | 54.14 |
| Zm00001d028202_P001 | Maize | cytosol | 43.81 | 46.46 |
| KXG25018 | Sorghum | mitochondrion | 33.33 | 44.3 |
| TraesCS5D01G326000.2 | Wheat | cytosol, nucleus | 80.0 | 39.62 |
| OQU83445 | Sorghum | mitochondrion | 28.57 | 37.04 |
| KXG28543 | Sorghum | mitochondrion | 35.24 | 33.95 |
| PGSC0003DMT400021706 | Potato | nucleus | 92.38 | 33.8 |
Protein Annotations
| EntrezGene:102589971 | EntrezGene:102592453 | MapMan:17.1.2.1.38 | Gene3D:3.10.450.80 | ProteinID:ABB86245 | ProteinID:ABB86245.1 |
| EMBL:DQ284457 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | UniProt:M1CKW2 | PFAM:PD002841 |
| PFAM:PF00935 | EnsemblPlantsGene:PGSC0003DMG400018094 | PGSC:PGSC0003DMG400018094 | EnsemblPlants:PGSC0003DMT400046603 | ScanProsite:PS01172 | PANTHER:PTHR10369 |
| InterPro:Ribosomal_L44e | InterPro:Ribosomal_zn-bd | SUPFAM:SSF57829 | UniParc:UPI0000069C02 | RefSeq:XP_006344406.1 | RefSeq:XP_006347450.1 |
| SEG:seg | : | : | : | : | : |
Description
Ribosomal protein L41 [Source:PGSC_GENE;Acc:PGSC0003DMG400018094]
Coordinates
chr3:-:52661138..52662995
Molecular Weight (calculated)
12001.9 Da
IEP (calculated)
10.999
GRAVY (calculated)
-1.166
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNVPKTKKT YCKSKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQGCKHV SQHPIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
Arabidopsis Description
Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.