Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d021652_P001 | Maize | cytosol | 100.0 | 100.0 |
| EER96597 | Sorghum | cytosol | 100.0 | 100.0 |
| TraesCS7D01G443900.1 | Wheat | cytosol | 99.05 | 99.05 |
| TraesCS2D01G226100.1 | Wheat | cytosol | 99.05 | 99.05 |
| TraesCS5A01G320100.1 | Wheat | cytosol | 99.05 | 99.05 |
| TraesCS5A01G417600.1 | Wheat | cytosol | 99.05 | 99.05 |
| TraesCS5B01G320300.1 | Wheat | cytosol | 99.05 | 99.05 |
| TraesCS5D01G425600.1 | Wheat | cytosol | 99.05 | 99.05 |
| TraesCS7A01G454800.1 | Wheat | cytosol | 99.05 | 99.05 |
| TraesCS7A01G454700.1 | Wheat | cytosol | 99.05 | 99.05 |
| Solyc06g071530.2.1 | Tomato | nucleus | 95.24 | 95.24 |
| Solyc03g112850.2.1 | Tomato | cytosol | 94.29 | 94.29 |
| PGSC0003DMT400069671 | Potato | cytosol | 94.29 | 94.29 |
| PGSC0003DMT400046603 | Potato | cytosol | 94.29 | 94.29 |
| KRH58331 | Soybean | cytosol | 93.33 | 93.33 |
| KRH43933 | Soybean | cytosol | 93.33 | 93.33 |
| KRH42207 | Soybean | cytosol | 93.33 | 93.33 |
| VIT_13s0064g00880.t01 | Wine grape | cytosol | 93.33 | 93.33 |
| KRH10493 | Soybean | nucleus | 93.33 | 93.33 |
| CDX90258 | Canola | extracellular | 93.33 | 92.45 |
| CDX92983 | Canola | cytosol | 93.33 | 89.91 |
| GSMUA_Achr9P24920_001 | Banana | cytosol | 94.29 | 87.61 |
| GSMUA_Achr6P29350_001 | Banana | extracellular | 96.19 | 81.45 |
| TraesCS5B01G419800.1 | Wheat | cytosol | 98.1 | 78.63 |
| Bra023728.1-P | Field mustard | cytosol | 59.05 | 78.48 |
| VIT_01s0011g02090.t01 | Wine grape | cytosol | 92.38 | 78.23 |
| CDY12759 | Canola | cytosol | 94.29 | 77.95 |
| CDY49411 | Canola | cytosol | 94.29 | 77.95 |
| GSMUA_Achr6P00480_001 | Banana | endoplasmic reticulum, extracellular | 95.24 | 76.34 |
| CDY12064 | Canola | cytosol | 94.29 | 76.15 |
| Solyc03g123940.1.1 | Tomato | cytosol | 63.81 | 73.63 |
| CDX94859 | Canola | cytosol | 94.29 | 72.79 |
| CDX77519 | Canola | cytosol | 94.29 | 72.79 |
| CDY18124 | Canola | cytosol | 94.29 | 72.26 |
| Zm00001d019562_P003 | Maize | cytosol | 97.14 | 67.11 |
| TraesCS2B01G246000.1 | Wheat | golgi | 99.05 | 66.24 |
| CDY09010 | Canola | cytosol, mitochondrion | 94.29 | 64.71 |
| PGSC0003DMT400050885 | Potato | cytosol | 94.29 | 64.29 |
| HORVU5Hr1G081590.1 | Barley | cytosol, plastid | 99.05 | 64.2 |
| HORVU5Hr1G101600.1 | Barley | cytosol, nucleus, plastid | 99.05 | 63.41 |
| CDX85095 | Canola | cytosol, plastid | 94.29 | 62.26 |
| HORVU7Hr1G104300.1 | Barley | nucleus | 99.05 | 60.47 |
| GSMUA_Achr9P11710_001 | Banana | cytosol | 96.19 | 57.71 |
| HORVU2Hr1G045920.1 | Barley | cytosol, plastid | 99.05 | 57.46 |
| AT4G14320.2 | Thale cress | cytosol | 80.0 | 54.55 |
| Zm00001d028202_P001 | Maize | cytosol | 48.57 | 51.52 |
| PGSC0003DMT400021706 | Potato | nucleus | 86.67 | 31.71 |
| VIT_01s0011g02080.t01 | Wine grape | nucleus, plastid | 92.38 | 27.56 |
Protein Annotations
| EntrezGene:100280597 | EntrezGene:103633242 | MapMan:17.1.2.1.38 | Gene3D:3.10.450.80 | UniProt:B6SIY6 | EMBL:BT062811 |
| EMBL:BT087885 | EMBL:EU952701 | EMBL:EU952804 | EMBL:EU959870 | EMBL:EU961487 | EMBL:EU975478 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | ProteinID:ONM24122.1 | ProteinID:ONM57905.1 | PFAM:PD002841 |
| PFAM:PF00935 | ScanProsite:PS01172 | PANTHER:PTHR10369 | InterPro:Ribosomal_L44e | InterPro:Ribosomal_zn-bd | SUPFAM:SSF57829 |
| UniParc:UPI000182AE11 | EnsemblPlantsGene:Zm00001d006510 | EnsemblPlants:Zm00001d006510_P001 | EnsemblPlants:Zm00001d006510_T001 | SEG:seg | : |
Description
60S ribosomal protein L44
Coordinates
chr2:+:210201606..210203537
Molecular Weight (calculated)
12084.9 Da
IEP (calculated)
10.907
GRAVY (calculated)
-1.234
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNVPKTKKT YCKNKECKKH TLHKVTQYKK GKDSLSAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL KLQCQSCKHY SQHAIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
Arabidopsis Description
Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.