Factsheet for Zm00001d028202_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023728.1-P	Field mustard	cytosol	43.43	54.43
OQU90027	Sorghum	cytosol	49.49	50.0
Zm00001d021652_P001	Maize	cytosol	51.52	48.57
Zm00001d006510_P001	Maize	plasma membrane	51.52	48.57
Solyc06g071530.2.1	Tomato	nucleus	47.47	44.76
KRH58331	Soybean	cytosol	47.47	44.76
KRH43933	Soybean	cytosol	47.47	44.76
KRH42207	Soybean	cytosol	47.47	44.76
KRH10493	Soybean	nucleus	47.47	44.76
VIT_13s0064g00880.t01	Wine grape	cytosol	46.46	43.81
Solyc03g112850.2.1	Tomato	cytosol	46.46	43.81
PGSC0003DMT400069671	Potato	cytosol	46.46	43.81
PGSC0003DMT400046603	Potato	cytosol	46.46	43.81
CDX90258	Canola	extracellular	46.46	43.4
GSMUA_Achr9P24920_001	Banana	cytosol	49.49	43.36
CDX92983	Canola	cytosol	46.46	42.2
GSMUA_Achr6P29350_001	Banana	extracellular	49.49	39.52
GSMUA_Achr6P00480_001	Banana	endoplasmic reticulum, extracellular	49.49	37.4
VIT_01s0011g02090.t01	Wine grape	cytosol	46.46	37.1
CDY49411	Canola	cytosol	46.46	36.22
CDY12759	Canola	cytosol	46.46	36.22
CDY12064	Canola	cytosol	46.46	35.38
CDX94859	Canola	cytosol	46.46	33.82
CDX77519	Canola	cytosol	46.46	33.82
CDY18124	Canola	cytosol	46.46	33.58
Zm00001d019562_P003	Maize	cytosol	50.51	32.89
AT4G14320.2	Thale cress	cytosol	47.47	30.52
CDY09010	Canola	cytosol, mitochondrion	46.46	30.07
PGSC0003DMT400050885	Potato	cytosol	46.46	29.87
CDX85095	Canola	cytosol, plastid	46.46	28.93
GSMUA_Achr9P11710_001	Banana	cytosol	49.49	28.0
Solyc03g123940.1.1	Tomato	cytosol	23.23	25.27
TraesCS5D01G326000.2	Wheat	cytosol, nucleus	53.54	25.0
PGSC0003DMT400021706	Potato	nucleus	42.42	14.63
VIT_01s0011g02080.t01	Wine grape	nucleus, plastid	46.46	13.07

Protein Annotations

MapMan:17.1.2.1.38	Gene3D:3.10.450.80	UniProt:A0A1D6JSU9	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
ProteinID:ONL94980.1	PFAM:PD002841	PFAM:PF00935	ScanProsite:PS01172	PANTHER:PTHR10369	InterPro:Ribosomal_L44e
InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829	UniParc:UPI000842F552	EnsemblPlantsGene:Zm00001d028202	EnsemblPlants:Zm00001d028202_P001	EnsemblPlants:Zm00001d028202_T001
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L36a

Coordinates

chr1:+:26122680..26123224

Molecular Weight (calculated)

11226.0 Da

IEP (calculated)

11.391

GRAVY (calculated)

-0.371

Length

99 amino acids

Sequence
(BLAST)

1: MSAQGKRRYD RKQSGHGGQT KPVFHKKAKT TKKIVLKLQC QSCKHYSQHA IKVLPVSIGY RSLFAYSLCH RGASILRLVE TRMARARLFS KLLVHLSGC

Best Arabidopsis Sequence Match ( AT3G23390.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

RPL36AB60S ribosomal protein L36a [Source:UniProtKB/Swiss-Prot;Acc:O23290]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.