Factsheet for TraesCS5D01G326000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G425600.1	Wheat	cytosol	42.92	86.67
TraesCS2D01G226100.1	Wheat	cytosol	42.92	86.67
TraesCS7D01G443900.1	Wheat	cytosol	42.92	86.67
OQU90027	Sorghum	cytosol	39.15	84.69
Os07t0450000-01	Rice	cytosol	41.51	83.81
Os07t0523100-00	Rice	plastid	41.51	83.81
Os07t0523150-00	Rice	cytosol	41.51	83.81
Os07t0523700-02	Rice	cytosol	37.26	83.16
Os07t0523500-02	Rice	cytosol	37.26	83.16
Os07t0523300-01	Rice	cytosol	37.26	83.16
Solyc06g071530.2.1	Tomato	nucleus	40.09	80.95
Solyc03g112850.2.1	Tomato	cytosol	39.62	80.0
PGSC0003DMT400046603	Potato	cytosol	39.62	80.0
PGSC0003DMT400069671	Potato	cytosol	39.62	80.0
CDX90258	Canola	extracellular	39.62	79.25
KRH10493	Soybean	nucleus	39.15	79.05
KRH58331	Soybean	cytosol	39.15	79.05
KRH43933	Soybean	cytosol	39.15	79.05
KRH42207	Soybean	cytosol	39.15	79.05
VIT_13s0064g00880.t01	Wine grape	cytosol	39.15	79.05
CDX92983	Canola	cytosol	39.62	77.06
GSMUA_Achr9P24920_001	Banana	cytosol	40.09	75.22
GSMUA_Achr6P29350_001	Banana	extracellular	41.04	70.16
VIT_01s0011g02090.t01	Wine grape	cytosol	39.15	66.94
CDY49411	Canola	cytosol	39.62	66.14
CDY12759	Canola	cytosol	39.62	66.14
GSMUA_Achr6P00480_001	Banana	endoplasmic reticulum, extracellular	40.57	65.65
CDY12064	Canola	cytosol	39.62	64.62
CDX94859	Canola	cytosol	39.62	61.76
CDX77519	Canola	cytosol	39.62	61.76
CDY18124	Canola	cytosol	39.62	61.31
Bra023728.1-P	Field mustard	cytosol	22.64	60.76
Solyc03g123940.1.1	Tomato	cytosol	25.47	59.34
CDY09010	Canola	cytosol, mitochondrion	39.62	54.9
PGSC0003DMT400050885	Potato	cytosol	39.62	54.55
Zm00001d028202_P001	Maize	cytosol	25.0	53.54
AT4G14320.2	Thale cress	cytosol	38.68	53.25
CDX85095	Canola	cytosol, plastid	39.62	52.83
GSMUA_Achr9P11710_001	Banana	cytosol	40.57	49.14
PGSC0003DMT400021706	Potato	nucleus	36.79	27.18
VIT_01s0011g02080.t01	Wine grape	nucleus, plastid	39.15	23.58

Protein Annotations

MapMan:17.1.2.1.38	Gene3D:3.10.450.80	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	PFAM:PD002841	PFAM:PF00935
ScanProsite:PS01172	InterPro:Ribosomal_L44e	InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G326000
EnsemblPlants:TraesCS5D01G326000.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:418430213..418430958

Molecular Weight (calculated)

24164.7 Da

IEP (calculated)

10.166

GRAVY (calculated)

-0.321

Length

212 amino acids

Sequence
(BLAST)

001: VNVPKTKKTY CKNKECKKHT LHKVTQYKKG KDSLSAQGKR RYDRKQSGYG GQTKPVFHKK AKTTKKIVLK LQCQSCKHYS QRAIKVLTSH LICHPISLLC
101: SVVFTCLTLY LYRCYRGAST LKSVETRRAR EPLSSKLMIS LLCSECCART CHPNNVLSYY SGYNSMGHVA YVLPSCQLLQ IHETSKNDLY GLEFVMGVLD
201: LTRIVYVSGF TF

Best Arabidopsis Sequence Match ( AT3G23390.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

RPL36AB60S ribosomal protein L36a [Source:UniProtKB/Swiss-Prot;Acc:O23290]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.