CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033491.1-P	Field mustard	cytosol	98.11	99.05
CDX92983	Canola	cytosol	98.11	95.41
AT3G23390.1	Thale cress	cytosol	94.34	95.24
Solyc03g112850.2.1	Tomato	cytosol	93.4	94.29
Solyc06g071530.2.1	Tomato	nucleus	93.4	94.29
PGSC0003DMT400069671	Potato	cytosol	93.4	94.29
PGSC0003DMT400046603	Potato	cytosol	93.4	94.29
Os07t0523300-01	Rice	cytosol	83.96	93.68
Os07t0523500-02	Rice	cytosol	83.96	93.68
Os07t0523700-02	Rice	cytosol	83.96	93.68
EER90549	Sorghum	cytosol	92.45	93.33
EER96597	Sorghum	cytosol	92.45	93.33
VIT_13s0064g00880.t01	Wine grape	cytosol	92.45	93.33
Zm00001d006510_P001	Maize	plasma membrane	92.45	93.33
Zm00001d021652_P001	Maize	cytosol	92.45	93.33
Os07t0523100-00	Rice	plastid	91.51	92.38
Os07t0523150-00	Rice	cytosol	91.51	92.38
Os07t0450000-01	Rice	cytosol	91.51	92.38
TraesCS2D01G226100.1	Wheat	cytosol	91.51	92.38
TraesCS5A01G320100.1	Wheat	cytosol	91.51	92.38
TraesCS5A01G417600.1	Wheat	cytosol	91.51	92.38
TraesCS5B01G320300.1	Wheat	cytosol	91.51	92.38
TraesCS5D01G425600.1	Wheat	cytosol	91.51	92.38
TraesCS7A01G454700.1	Wheat	cytosol	91.51	92.38
TraesCS7A01G454800.1	Wheat	cytosol	91.51	92.38
TraesCS7D01G443900.1	Wheat	cytosol	91.51	92.38
KRH58331	Soybean	cytosol	91.51	92.38
KRH43933	Soybean	cytosol	91.51	92.38
KRH42207	Soybean	cytosol	91.51	92.38
KRH10493	Soybean	nucleus	91.51	92.38
GSMUA_Achr9P24920_001	Banana	cytosol	88.68	83.19
CDY12759	Canola	cytosol	98.11	81.89
CDY49411	Canola	cytosol	98.11	81.89
CDY12064	Canola	cytosol	98.11	80.0
OQU90027	Sorghum	cytosol	73.58	79.59
VIT_01s0011g02090.t01	Wine grape	cytosol	92.45	79.03
GSMUA_Achr6P29350_001	Banana	extracellular	90.57	77.42
CDX77519	Canola	cytosol	98.11	76.47
CDX94859	Canola	cytosol	98.11	76.47
CDY18124	Canola	cytosol	98.11	75.91
TraesCS5B01G419800.1	Wheat	cytosol	91.51	74.05
Solyc03g123940.1.1	Tomato	cytosol	63.21	73.63
GSMUA_Achr6P00480_001	Banana	endoplasmic reticulum, extracellular	89.62	72.52
CDY09010	Canola	cytosol, mitochondrion	98.11	67.97
CDX85095	Canola	cytosol, plastid	98.11	65.41
PGSC0003DMT400050885	Potato	cytosol	93.4	64.29
Zm00001d019562_P003	Maize	cytosol	91.51	63.82
TraesCS2B01G246000.1	Wheat	golgi	91.51	61.78
HORVU5Hr1G081590.1	Barley	cytosol, plastid	91.51	59.88
HORVU5Hr1G101600.1	Barley	cytosol, nucleus, plastid	91.51	59.15
HORVU7Hr1G104300.1	Barley	nucleus	91.51	56.4
GSMUA_Achr9P11710_001	Banana	cytosol	89.62	54.29
HORVU2Hr1G045920.1	Barley	cytosol, plastid	91.51	53.59
KXG25018	Sorghum	mitochondrion	34.91	46.84
Zm00001d028202_P001	Maize	cytosol	43.4	46.46
OQU83445	Sorghum	mitochondrion	31.13	40.74
TraesCS5D01G326000.2	Wheat	cytosol, nucleus	79.25	39.62
KXG28543	Sorghum	mitochondrion	37.74	36.7
PGSC0003DMT400021706	Potato	nucleus	86.79	32.06
VIT_01s0011g02080.t01	Wine grape	nucleus, plastid	93.4	28.12

Protein Annotations

MapMan:17.1.2.1.38	Gene3D:3.10.450.80	GO:A0A078DSU4	EnsemblPlants:CDX90258	ProteinID:CDX90258	ProteinID:CDX90258.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00150826001	PFAM:PD002841	PFAM:PF00935	ScanProsite:PS01172
PANTHER:PTHR10369	InterPro:Ribosomal_L44e	InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829	UniParc:UPI0004EE4956	SEG:seg

Description

BnaA08g17260D

Coordinates

chrLK031862:+:951576..952792

Molecular Weight (calculated)

12212.1 Da

IEP (calculated)

10.999

GRAVY (calculated)

-1.193

Length

106 amino acids

Sequence
(BLAST)

001: MSVNIPKTKK TYCKNKECKK HTLHKVTQYK KGKDSLAAQG KRRYDRKQSG YGGQTKPVFH KKAKTTKKIV LRLQCQTCKH FSQHSIKRCK HFEIGGDKKG
101: KGTSLF

Best Arabidopsis Sequence Match ( AT3G23390.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

RPL36AB60S ribosomal protein L36a [Source:UniProtKB/Swiss-Prot;Acc:O23290]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.