Factsheet for Zm00001d019562_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0523300-01	Rice	cytosol	62.5	100.0
Os07t0523700-02	Rice	cytosol	62.5	100.0
Zm00001d021652_P001	Maize	cytosol	67.11	97.14
Zm00001d006510_P001	Maize	plasma membrane	67.11	97.14
VIT_13s0064g00880.t01	Wine grape	cytosol	65.13	94.29
Solyc06g071530.2.1	Tomato	nucleus	65.13	94.29
PGSC0003DMT400046603	Potato	cytosol	64.47	93.33
PGSC0003DMT400069671	Potato	cytosol	64.47	93.33
Solyc03g112850.2.1	Tomato	cytosol	64.47	93.33
KRH10493	Soybean	nucleus	63.82	92.38
KRH42207	Soybean	cytosol	63.82	92.38
KRH43933	Soybean	cytosol	63.82	92.38
KRH58331	Soybean	cytosol	63.82	92.38
CDX90258	Canola	extracellular	63.82	91.51
CDX92983	Canola	cytosol	64.47	89.91
GSMUA_Achr9P24920_001	Banana	cytosol	66.45	89.38
GSMUA_Achr6P29350_001	Banana	extracellular	66.45	81.45
VIT_01s0011g02090.t01	Wine grape	cytosol	65.79	80.65
GSMUA_Achr6P00480_001	Banana	endoplasmic reticulum, extracellular	67.76	78.63
Bra023728.1-P	Field mustard	cytosol	40.79	78.48
CDY49411	Canola	cytosol	63.82	76.38
CDY12759	Canola	cytosol	63.82	76.38
CDY12064	Canola	cytosol	64.47	75.38
Solyc03g123940.1.1	Tomato	cytosol	43.42	72.53
CDX94859	Canola	cytosol	63.82	71.32
CDX77519	Canola	cytosol	63.82	71.32
CDY18124	Canola	cytosol	63.82	70.8
PGSC0003DMT400050885	Potato	cytosol	64.47	63.64
CDY09010	Canola	cytosol, mitochondrion	63.82	63.4
CDX85095	Canola	cytosol, plastid	63.82	61.01
GSMUA_Achr9P11710_001	Banana	cytosol	67.11	58.29
AT4G14320.2	Thale cress	cytosol	54.61	53.9
Zm00001d028202_P001	Maize	cytosol	32.89	50.51
PGSC0003DMT400021706	Potato	nucleus	59.87	31.71
VIT_01s0011g02080.t01	Wine grape	nucleus, plastid	65.13	28.12

Protein Annotations

EntrezGene:100284825	MapMan:17.1.2.1.38	Gene3D:3.10.450.80	UniProt:A0A1D6HYQ3	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	ProteinID:ONM53245.1	PFAM:PD002841	PFAM:PF00935	ScanProsite:PS01172	InterPro:Ribosomal_L44e
InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829	UniParc:UPI000842501E	EnsemblPlantsGene:Zm00001d019562	EnsemblPlants:Zm00001d019562_P003	EnsemblPlants:Zm00001d019562_T003

Description

60S ribosomal protein L44

Coordinates

chr7:+:42852762..42855296

Molecular Weight (calculated)

17302.3 Da

IEP (calculated)

10.768

GRAVY (calculated)

-0.744

Length

152 amino acids

Sequence
(BLAST)

001: MLGMESSNVN VPKTKKTYCK NKECRKHTLH KVTQYKKGKD SLSAQGKRRY DRKQSGYGGQ TKPVFHKKVQ HKFSTVCSTN YILKAAFGVL NADPLFTCFL
101: TLTLRSIQAK TTKKIVLKLQ CQSCKHYSQH PIKRCKHFEI GGDKKGKGTS LF

Best Arabidopsis Sequence Match ( AT4G14320.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.