Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0523700-02 | Rice | cytosol | 81.42 | 96.84 |
| Os07t0523500-02 | Rice | cytosol | 81.42 | 96.84 |
| Os07t0523300-01 | Rice | cytosol | 81.42 | 96.84 |
| Os07t0523150-00 | Rice | cytosol | 89.38 | 96.19 |
| Os07t0523100-00 | Rice | plastid | 89.38 | 96.19 |
| Os07t0450000-01 | Rice | cytosol | 89.38 | 96.19 |
| Zm00001d021652_P001 | Maize | cytosol | 87.61 | 94.29 |
| Zm00001d006510_P001 | Maize | plasma membrane | 87.61 | 94.29 |
| EER96597 | Sorghum | cytosol | 87.61 | 94.29 |
| TraesCS2D01G226100.1 | Wheat | cytosol | 86.73 | 93.33 |
| TraesCS5A01G320100.1 | Wheat | cytosol | 86.73 | 93.33 |
| TraesCS5B01G320300.1 | Wheat | cytosol | 86.73 | 93.33 |
| TraesCS5A01G417600.1 | Wheat | cytosol | 86.73 | 93.33 |
| TraesCS5D01G425600.1 | Wheat | cytosol | 86.73 | 93.33 |
| TraesCS7D01G443900.1 | Wheat | cytosol | 86.73 | 93.33 |
| TraesCS7A01G454800.1 | Wheat | cytosol | 86.73 | 93.33 |
| TraesCS7A01G454700.1 | Wheat | cytosol | 86.73 | 93.33 |
| VIT_13s0064g00880.t01 | Wine grape | cytosol | 84.96 | 91.43 |
| Solyc06g071530.2.1 | Tomato | nucleus | 84.96 | 91.43 |
| PGSC0003DMT400046603 | Potato | cytosol | 84.07 | 90.48 |
| PGSC0003DMT400069671 | Potato | cytosol | 84.07 | 90.48 |
| Solyc03g112850.2.1 | Tomato | cytosol | 84.07 | 90.48 |
| KRH10493 | Soybean | nucleus | 83.19 | 89.52 |
| KRH42207 | Soybean | cytosol | 83.19 | 89.52 |
| KRH43933 | Soybean | cytosol | 83.19 | 89.52 |
| KRH58331 | Soybean | cytosol | 83.19 | 89.52 |
| CDX90258 | Canola | extracellular | 83.19 | 88.68 |
| CDX92983 | Canola | cytosol | 83.19 | 86.24 |
| GSMUA_Achr6P29350_001 | Banana | extracellular | 90.27 | 82.26 |
| OQU90027 | Sorghum | cytosol | 70.8 | 81.63 |
| GSMUA_Achr6P00480_001 | Banana | endoplasmic reticulum, extracellular | 91.15 | 78.63 |
| Bra023728.1-P | Field mustard | cytosol | 54.87 | 78.48 |
| VIT_01s0011g02090.t01 | Wine grape | cytosol | 84.96 | 77.42 |
| TraesCS5B01G419800.1 | Wheat | cytosol | 86.73 | 74.81 |
| CDY12759 | Canola | cytosol | 84.07 | 74.8 |
| CDY49411 | Canola | cytosol | 84.07 | 74.8 |
| CDY12064 | Canola | cytosol | 84.07 | 73.08 |
| CDX77519 | Canola | cytosol | 84.07 | 69.85 |
| CDX94859 | Canola | cytosol | 84.07 | 69.85 |
| CDY18124 | Canola | cytosol | 84.07 | 69.34 |
| Solyc03g123940.1.1 | Tomato | cytosol | 55.75 | 69.23 |
| Zm00001d019562_P003 | Maize | cytosol | 89.38 | 66.45 |
| TraesCS2B01G246000.1 | Wheat | golgi | 86.73 | 62.42 |
| PGSC0003DMT400050885 | Potato | cytosol | 84.96 | 62.34 |
| CDY09010 | Canola | cytosol, mitochondrion | 84.07 | 62.09 |
| HORVU5Hr1G081590.1 | Barley | cytosol, plastid | 86.73 | 60.49 |
| HORVU5Hr1G101600.1 | Barley | cytosol, nucleus, plastid | 86.73 | 59.76 |
| CDX85095 | Canola | cytosol, plastid | 84.07 | 59.75 |
| GSMUA_Achr9P11710_001 | Banana | cytosol | 90.27 | 58.29 |
| HORVU7Hr1G104300.1 | Barley | nucleus | 87.61 | 57.56 |
| HORVU2Hr1G045920.1 | Barley | cytosol, plastid | 86.73 | 54.14 |
| AT4G14320.2 | Thale cress | cytosol | 70.8 | 51.95 |
| Zm00001d028202_P001 | Maize | cytosol | 43.36 | 49.49 |
| TraesCS5D01G326000.2 | Wheat | cytosol, nucleus | 75.22 | 40.09 |
| PGSC0003DMT400021706 | Potato | nucleus | 79.65 | 31.36 |
| VIT_01s0011g02080.t01 | Wine grape | nucleus, plastid | 86.73 | 27.84 |
Protein Annotations
| MapMan:17.1.2.1.38 | Gene3D:3.10.450.80 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr9G24920_001 |
| EnsemblPlants:GSMUA_Achr9P24920_001 | EnsemblPlants:GSMUA_Achr9T24920_001 | UniProt:M0U399 | PFAM:PD002841 | PFAM:PF00935 | ScanProsite:PS01172 |
| PANTHER:PTHR10369 | InterPro:Ribosomal_L44e | InterPro:Ribosomal_zn-bd | SUPFAM:SSF57829 | UniParc:UPI000295FE08 | SEG:seg |
Description
60S ribosomal protein L44 [Source:GMGC_GENE;Acc:GSMUA_Achr9G24920_001]
Coordinates
chr9:-:29576883..29578984
Molecular Weight (calculated)
13029.1 Da
IEP (calculated)
11.065
GRAVY (calculated)
-1.069
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGMRSTFLV NVPKTKKTFC KNKVCRKHTL HKVTQYKKGK DSLSVQGKRR YDRKQSGYGG QTKPVFHKKA KTTKKIVLKL QCQSCKHYSQ HPIKRCKHFE
101: IGGDKKGKGT SLF
101: IGGDKKGKGT SLF
001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
Arabidopsis Description
Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.