Factsheet for TraesCS2B01G246000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G320300.1	Wheat	cytosol	66.88	100.0
TraesCS2D01G226100.1	Wheat	cytosol	66.88	100.0
Zm00001d021652_P001	Maize	cytosol	66.24	99.05
Zm00001d006510_P001	Maize	plasma membrane	66.24	99.05
EER96597	Sorghum	cytosol	66.24	99.05
Os07t0450000-01	Rice	cytosol	64.97	97.14
Os07t0523100-00	Rice	plastid	64.97	97.14
Os07t0523150-00	Rice	cytosol	64.97	97.14
Os07t0523300-01	Rice	cytosol	58.6	96.84
Os07t0523700-02	Rice	cytosol	58.6	96.84
Os07t0523500-02	Rice	cytosol	58.6	96.84
Solyc06g071530.2.1	Tomato	nucleus	63.06	94.29
PGSC0003DMT400046603	Potato	cytosol	62.42	93.33
PGSC0003DMT400069671	Potato	cytosol	62.42	93.33
Solyc03g112850.2.1	Tomato	cytosol	62.42	93.33
KRH58331	Soybean	cytosol	61.78	92.38
VIT_13s0064g00880.t01	Wine grape	cytosol	61.78	92.38
KRH43933	Soybean	cytosol	61.78	92.38
KRH42207	Soybean	cytosol	61.78	92.38
KRH10493	Soybean	nucleus	61.78	92.38
CDX90258	Canola	extracellular	61.78	91.51
CDX92983	Canola	cytosol	61.78	88.99
GSMUA_Achr9P24920_001	Banana	cytosol	62.42	86.73
GSMUA_Achr6P29350_001	Banana	extracellular	64.33	81.45
TraesCS5B01G419800.1	Wheat	cytosol	66.24	79.39
VIT_01s0011g02090.t01	Wine grape	cytosol	61.78	78.23
CDY49411	Canola	cytosol	63.06	77.95
CDY12759	Canola	cytosol	63.06	77.95
Bra023728.1-P	Field mustard	cytosol	38.85	77.22
CDY12064	Canola	cytosol	63.69	76.92
GSMUA_Achr6P00480_001	Banana	endoplasmic reticulum, extracellular	63.06	75.57
CDX77519	Canola	cytosol	64.97	75.0
CDY18124	Canola	cytosol	64.97	74.45
CDX94859	Canola	cytosol	64.33	74.26
Solyc03g123940.1.1	Tomato	cytosol	42.04	72.53
CDY09010	Canola	cytosol, mitochondrion	65.61	67.32
HORVU2Hr1G045920.1	Barley	cytosol, plastid	76.43	66.3
PGSC0003DMT400050885	Potato	cytosol	64.33	65.58
CDX85095	Canola	cytosol, plastid	64.97	64.15
GSMUA_Achr9P11710_001	Banana	cytosol	66.88	60.0
AT4G14320.2	Thale cress	cytosol	54.14	55.19
PGSC0003DMT400021706	Potato	nucleus	59.24	32.4
VIT_01s0011g02080.t01	Wine grape	nucleus, plastid	62.42	27.84

Protein Annotations

MapMan:17.1.2.1.38	Gene3D:3.10.450.80	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	PFAM:PD002841	PFAM:PF00935
ScanProsite:PS01172	InterPro:Ribosomal_L44e	InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829	EnsemblPlantsGene:TraesCS2B01G246000	EnsemblPlants:TraesCS2B01G246000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:250069804..250071527

Molecular Weight (calculated)

17647.6 Da

IEP (calculated)

11.222

GRAVY (calculated)

-1.122

Length

157 amino acids

Sequence
(BLAST)

001: MKEATVSRLA NPSSRAEGHK TTPLSLPAAT CRNSSTRKGR EARRSPISPA VKMVNVPKTK KTYCKNKECK KHTLHKVTQY KKGKDSLSAQ GKRRYDRKQS
101: GYGGQTKPVF HKKAKTTKKI VLKLQCQSCK HYSQRAIKRC KHFEIGGDKK GKGTSLF

Best Arabidopsis Sequence Match ( AT4G14320.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.