Factsheet for VIT_01s0011g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g00880.t01	Wine grape	cytosol	29.55	99.05
KRH58331	Soybean	cytosol	28.98	97.14
KRH10493	Soybean	nucleus	28.98	97.14
KRH43933	Soybean	cytosol	28.98	97.14
KRH42207	Soybean	cytosol	28.98	97.14
EER90549	Sorghum	cytosol	28.41	95.24
Os07t0523700-02	Rice	cytosol	25.57	94.74
Os07t0523500-02	Rice	cytosol	25.57	94.74
Os07t0523300-01	Rice	cytosol	25.57	94.74
Os07t0450000-01	Rice	cytosol	28.12	94.29
Os07t0523100-00	Rice	plastid	28.12	94.29
Os07t0523150-00	Rice	cytosol	28.12	94.29
CDX90258	Canola	extracellular	28.12	93.4
Bra033491.1-P	Field mustard	cytosol	27.84	93.33
Bra014945.1-P	Field mustard	cytosol	27.84	93.33
Bra010760.1-P	Field mustard	cytosol	27.84	93.33
Bra001911.1-P	Field mustard	cytosol	27.84	93.33
Zm00001d006510_P001	Maize	plasma membrane	27.56	92.38
Zm00001d021652_P001	Maize	cytosol	27.56	92.38
AT3G23390.1	Thale cress	cytosol	27.56	92.38
EER96597	Sorghum	cytosol	27.56	92.38
TraesCS2D01G226100.1	Wheat	cytosol	27.27	91.43
TraesCS5A01G320100.1	Wheat	cytosol	27.27	91.43
TraesCS5A01G417600.1	Wheat	cytosol	27.27	91.43
TraesCS5B01G320300.1	Wheat	cytosol	27.27	91.43
TraesCS5D01G425600.1	Wheat	cytosol	27.27	91.43
TraesCS7A01G454700.1	Wheat	cytosol	27.27	91.43
TraesCS7A01G454800.1	Wheat	cytosol	27.27	91.43
TraesCS7D01G443900.1	Wheat	cytosol	27.27	91.43
CDX92983	Canola	cytosol	27.84	89.91
GSMUA_Achr9P24920_001	Banana	cytosol	27.84	86.73
VIT_01s0011g02090.t01	Wine grape	cytosol	30.11	85.48
GSMUA_Achr6P29350_001	Banana	extracellular	28.12	79.84
Bra023728.1-P	Field mustard	cytosol	17.9	79.75
OQU90027	Sorghum	cytosol	22.16	79.59
CDY49411	Canola	cytosol	28.69	79.53
CDY12759	Canola	cytosol	28.41	78.74
CDY12064	Canola	cytosol	28.69	77.69
GSMUA_Achr6P00480_001	Banana	endoplasmic reticulum, extracellular	28.12	75.57
TraesCS5B01G419800.1	Wheat	cytosol	27.27	73.28
CDX77519	Canola	cytosol	28.12	72.79
CDX94859	Canola	cytosol	28.12	72.79
CDY18124	Canola	cytosol	28.12	72.26
CDY09010	Canola	cytosol, mitochondrion	28.69	66.01
Zm00001d019562_P003	Maize	cytosol	28.12	65.13
CDX85095	Canola	cytosol, plastid	28.69	63.52
TraesCS2B01G246000.1	Wheat	golgi	27.84	62.42
HORVU7Hr1G104300.1	Barley	nucleus	30.11	61.63
HORVU5Hr1G081590.1	Barley	cytosol, plastid	27.56	59.88
HORVU5Hr1G101600.1	Barley	cytosol, nucleus, plastid	27.84	59.76
HORVU2Hr1G045920.1	Barley	cytosol, plastid	29.55	57.46
GSMUA_Achr9P11710_001	Banana	cytosol	28.12	56.57
AT4G14320.2	Thale cress	cytosol	23.58	53.9
Zm00001d028202_P001	Maize	cytosol	13.07	46.46
KXG25018	Sorghum	mitochondrion	9.94	44.3
OQU83445	Sorghum	mitochondrion	9.94	43.21
KXG28543	Sorghum	mitochondrion	12.5	40.37
TraesCS5D01G326000.2	Wheat	cytosol, nucleus	23.58	39.15

Protein Annotations

MapMan:17.1.2.1.38	Gene3D:3.10.450.80	ProteinID:CCB50991	ProteinID:CCB50991.1	UniProt:F6HF51	EMBL:FN595752
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0022625
GO:GO:0030529	PFAM:PD002841	PFAM:PF00935	ScanProsite:PS01172	InterPro:Ribosomal_L44e	InterPro:Ribosomal_zn-bd
SUPFAM:SSF57829	TMHMM:TMhelix	UniParc:UPI000210A140	ArrayExpress:VIT_01s0011g02080	EnsemblPlantsGene:VIT_01s0011g02080	EnsemblPlants:VIT_01s0011g02080.t01
unigene:Vvi.22903	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:1764011..1770308

Molecular Weight (calculated)

39609.8 Da

IEP (calculated)

10.982

GRAVY (calculated)

-0.893

Length

352 amino acids

Sequence
(BLAST)

001: MAQIPKPTRK TSCFPTFSRF CGKFPIKKSC DDPRSDNRKE SRFGFSCSRF RVKKSAAKTV PVDASVPEKE NRDDEIRPEK PEKPENLRST SQNSGACHGT
101: QVVLEKTAKT RYGTAQSITP ENRKHLDRLD SSKGATCHKK RKLESKRSRL SQPSSPENVS ATTSPAAPMA RSDSFPARRR QKQPALRFEN SPRDGKLAGK
201: ADSVIAMTII MVTLAMMVIC GRLFAILFTS AWFYFVPYLR SGSKSNESVN VPKTKKTYCK SKECRKHTLH KVTQYKKGKD SLAAQGKRRY DRKQSGYGGQ
301: TKPVFHKKAK TTKKIVLRLQ CQGCKHVSQH PIKRCKHFEI GGDKKGKGTS LF

Best Arabidopsis Sequence Match ( AT4G14320.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.