Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- extracellular 5
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0523700-02 | Rice | cytosol | 74.19 | 96.84 |
| Os07t0523500-02 | Rice | cytosol | 74.19 | 96.84 |
| Os07t0523300-01 | Rice | cytosol | 74.19 | 96.84 |
| Zm00001d021652_P001 | Maize | cytosol | 81.45 | 96.19 |
| Zm00001d006510_P001 | Maize | plasma membrane | 81.45 | 96.19 |
| Os07t0523150-00 | Rice | cytosol | 81.45 | 96.19 |
| Os07t0523100-00 | Rice | plastid | 81.45 | 96.19 |
| Os07t0450000-01 | Rice | cytosol | 81.45 | 96.19 |
| EER96597 | Sorghum | cytosol | 81.45 | 96.19 |
| TraesCS2D01G226100.1 | Wheat | cytosol | 80.65 | 95.24 |
| TraesCS5A01G320100.1 | Wheat | cytosol | 80.65 | 95.24 |
| TraesCS5A01G417600.1 | Wheat | cytosol | 80.65 | 95.24 |
| TraesCS5B01G320300.1 | Wheat | cytosol | 80.65 | 95.24 |
| TraesCS5D01G425600.1 | Wheat | cytosol | 80.65 | 95.24 |
| TraesCS7A01G454700.1 | Wheat | cytosol | 80.65 | 95.24 |
| TraesCS7A01G454800.1 | Wheat | cytosol | 80.65 | 95.24 |
| TraesCS7D01G443900.1 | Wheat | cytosol | 80.65 | 95.24 |
| Solyc06g071530.2.1 | Tomato | nucleus | 79.03 | 93.33 |
| Solyc03g112850.2.1 | Tomato | cytosol | 78.23 | 92.38 |
| PGSC0003DMT400046603 | Potato | cytosol | 78.23 | 92.38 |
| PGSC0003DMT400069671 | Potato | cytosol | 78.23 | 92.38 |
| VIT_13s0064g00880.t01 | Wine grape | cytosol | 77.42 | 91.43 |
| CDX90258 | Canola | extracellular | 77.42 | 90.57 |
| GSMUA_Achr9P24920_001 | Banana | cytosol | 82.26 | 90.27 |
| KRH10493 | Soybean | nucleus | 75.81 | 89.52 |
| KRH42207 | Soybean | cytosol | 75.81 | 89.52 |
| KRH43933 | Soybean | cytosol | 75.81 | 89.52 |
| KRH58331 | Soybean | cytosol | 75.81 | 89.52 |
| CDX92983 | Canola | cytosol | 78.23 | 88.99 |
| OQU90027 | Sorghum | cytosol | 66.13 | 83.67 |
| VIT_01s0011g02090.t01 | Wine grape | cytosol | 79.84 | 79.84 |
| GSMUA_Achr6P00480_001 | Banana | endoplasmic reticulum, extracellular | 83.87 | 79.39 |
| TraesCS5B01G419800.1 | Wheat | cytosol | 80.65 | 76.34 |
| CDY12759 | Canola | cytosol | 77.42 | 75.59 |
| CDY49411 | Canola | cytosol | 77.42 | 75.59 |
| CDY12064 | Canola | cytosol | 78.23 | 74.62 |
| Solyc03g123940.1.1 | Tomato | cytosol | 52.42 | 71.43 |
| CDX77519 | Canola | cytosol | 78.23 | 71.32 |
| CDX94859 | Canola | cytosol | 78.23 | 71.32 |
| CDY18124 | Canola | cytosol | 78.23 | 70.8 |
| Zm00001d019562_P003 | Maize | cytosol | 81.45 | 66.45 |
| TraesCS2B01G246000.1 | Wheat | golgi | 81.45 | 64.33 |
| PGSC0003DMT400050885 | Potato | cytosol | 79.03 | 63.64 |
| CDY09010 | Canola | cytosol, mitochondrion | 78.23 | 63.4 |
| HORVU5Hr1G081590.1 | Barley | cytosol, plastid | 80.65 | 61.73 |
| HORVU5Hr1G101600.1 | Barley | cytosol, nucleus, plastid | 80.65 | 60.98 |
| CDX85095 | Canola | cytosol, plastid | 77.42 | 60.38 |
| GSMUA_Achr9P11710_001 | Banana | cytosol | 83.87 | 59.43 |
| HORVU7Hr1G104300.1 | Barley | nucleus | 82.26 | 59.3 |
| HORVU2Hr1G045920.1 | Barley | cytosol, plastid | 80.65 | 55.25 |
| AT4G14320.2 | Thale cress | cytosol | 66.13 | 53.25 |
| Zm00001d028202_P001 | Maize | cytosol | 39.52 | 49.49 |
| TraesCS5D01G326000.2 | Wheat | cytosol, nucleus | 70.16 | 41.04 |
| PGSC0003DMT400021706 | Potato | nucleus | 73.39 | 31.71 |
| VIT_01s0011g02080.t01 | Wine grape | nucleus, plastid | 79.84 | 28.12 |
Protein Annotations
| MapMan:17.1.2.1.38 | Gene3D:3.10.450.80 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr6G29350_001 |
| EnsemblPlants:GSMUA_Achr6P29350_001 | EnsemblPlants:GSMUA_Achr6T29350_001 | UniProt:M0TB80 | PFAM:PD002841 | PFAM:PF00935 | ScanProsite:PS01172 |
| PANTHER:PTHR10369 | InterPro:Ribosomal_L44e | InterPro:Ribosomal_zn-bd | SUPFAM:SSF57829 | SignalP:SignalP-noTM | UniParc:UPI0002966AFE |
| SEG:seg | : | : | : | : | : |
Description
60S ribosomal protein L36a [Source:GMGC_GENE;Acc:GSMUA_Achr6G29350_001]
Coordinates
chr6:-:29595869..29598403
Molecular Weight (calculated)
14244.9 Da
IEP (calculated)
10.846
GRAVY (calculated)
-0.726
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMLIQGVEL LFRCVICMLL VNVPKTKKTY CKNKACKKHT LHKVTQYKKG KDSLSVQGKR RYDRKQSGYG GQTKPVFHKK AKTTKKIVLK LQCQSCKHYS
101: QHPIKRCKHF EIGGDKKGKG TSLF
101: QHPIKRCKHF EIGGDKKGKG TSLF
001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF
101: GTSLF
Arabidopsis Description
Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.