Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G23390.1 | Thale cress | cytosol | 59.09 | 86.67 |
| Solyc06g071530.2.1 | Tomato | nucleus | 55.84 | 81.9 |
| TraesCS2D01G226100.1 | Wheat | cytosol | 55.19 | 80.95 |
| TraesCS5A01G320100.1 | Wheat | cytosol | 55.19 | 80.95 |
| Solyc03g112850.2.1 | Tomato | cytosol | 55.19 | 80.95 |
| PGSC0003DMT400069671 | Potato | cytosol | 55.19 | 80.95 |
| TraesCS5A01G417600.1 | Wheat | cytosol | 55.19 | 80.95 |
| PGSC0003DMT400046603 | Potato | cytosol | 55.19 | 80.95 |
| TraesCS5B01G320300.1 | Wheat | cytosol | 55.19 | 80.95 |
| TraesCS5D01G425600.1 | Wheat | cytosol | 55.19 | 80.95 |
| TraesCS7A01G454700.1 | Wheat | cytosol | 55.19 | 80.95 |
| TraesCS7A01G454800.1 | Wheat | cytosol | 55.19 | 80.95 |
| TraesCS7D01G443900.1 | Wheat | cytosol | 55.19 | 80.95 |
| Zm00001d021652_P001 | Maize | cytosol | 54.55 | 80.0 |
| Zm00001d006510_P001 | Maize | plasma membrane | 54.55 | 80.0 |
| VIT_13s0064g00880.t01 | Wine grape | cytosol | 54.55 | 80.0 |
| Os07t0450000-01 | Rice | cytosol | 54.55 | 80.0 |
| Os07t0523100-00 | Rice | plastid | 54.55 | 80.0 |
| Os07t0523150-00 | Rice | cytosol | 54.55 | 80.0 |
| Os07t0523300-01 | Rice | cytosol | 49.35 | 80.0 |
| Os07t0523500-02 | Rice | cytosol | 49.35 | 80.0 |
| Os07t0523700-02 | Rice | cytosol | 49.35 | 80.0 |
| KRH43933 | Soybean | cytosol | 53.25 | 78.1 |
| KRH10493 | Soybean | nucleus | 53.25 | 78.1 |
| KRH58331 | Soybean | cytosol | 53.25 | 78.1 |
| KRH42207 | Soybean | cytosol | 53.25 | 78.1 |
| GSMUA_Achr9P24920_001 | Banana | cytosol | 51.95 | 70.8 |
| VIT_01s0011g02090.t01 | Wine grape | cytosol | 53.9 | 66.94 |
| GSMUA_Achr6P29350_001 | Banana | extracellular | 53.25 | 66.13 |
| TraesCS5B01G419800.1 | Wheat | cytosol | 54.55 | 64.12 |
| Bra023728.1-P | Field mustard | cytosol | 31.82 | 62.03 |
| GSMUA_Achr6P00480_001 | Banana | endoplasmic reticulum, extracellular | 52.6 | 61.83 |
| Solyc03g123940.1.1 | Tomato | cytosol | 35.06 | 59.34 |
| PGSC0003DMT400050885 | Potato | cytosol | 55.19 | 55.19 |
| Zm00001d019562_P003 | Maize | cytosol | 53.9 | 54.61 |
| TraesCS2B01G246000.1 | Wheat | golgi | 55.19 | 54.14 |
| HORVU5Hr1G081590.1 | Barley | cytosol, plastid | 55.19 | 52.47 |
| HORVU5Hr1G101600.1 | Barley | cytosol, nucleus, plastid | 55.19 | 51.83 |
| HORVU7Hr1G104300.1 | Barley | nucleus | 55.19 | 49.42 |
| Zm00001d028202_P001 | Maize | cytosol | 30.52 | 47.47 |
| HORVU2Hr1G045920.1 | Barley | cytosol, plastid | 55.19 | 46.96 |
| GSMUA_Achr9P11710_001 | Banana | cytosol | 53.25 | 46.86 |
| KXG25018 | Sorghum | mitochondrion | 23.38 | 45.57 |
| TraesCS5D01G326000.2 | Wheat | cytosol, nucleus | 53.25 | 38.68 |
| OQU83445 | Sorghum | mitochondrion | 20.13 | 38.27 |
| KXG28543 | Sorghum | mitochondrion | 24.68 | 34.86 |
| PGSC0003DMT400021706 | Potato | nucleus | 50.0 | 26.83 |
| VIT_01s0011g02080.t01 | Wine grape | nucleus, plastid | 53.9 | 23.58 |
Protein Annotations
| MapMan:17.1.2.1.38 | Gene3D:3.10.450.80 | EntrezGene:821920 | EntrezGene:827074 | ProteinID:AEE83419.1 | ArrayExpress:AT4G14320 |
| EnsemblPlantsGene:AT4G14320 | RefSeq:AT4G14320 | TAIR:AT4G14320 | RefSeq:AT4G14320-TAIR-G | EnsemblPlants:AT4G14320.2 | TAIR:AT4G14320.2 |
| Unigene:At.28618 | UniProt:F4JUQ4 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 |
| GO:GO:0030529 | RefSeq:NP_001190728.1 | PFAM:PD002841 | PFAM:PF00935 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS01172 | PANTHER:PTHR10369 |
| InterPro:Ribosomal_L44e | InterPro:Ribosomal_zn-bd | SUPFAM:SSF57829 | UniParc:UPI0001E92F67 | SEG:seg | : |
Description
Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
Coordinates
chr4:-:8241732..8243910
Molecular Weight (calculated)
17259.3 Da
IEP (calculated)
10.313
GRAVY (calculated)
-0.655
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIVLIESCA
101: GKMVDEMIFS CVCCGGPGCC GDRGEGPVGG GIDNEPVNVV VVVVEPGSQR RKMW
101: GKMVDEMIFS CVCCGGPGCC GDRGEGPVGG GIDNEPVNVV VVVVEPGSQR RKMW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.