Factsheet for Bra023728.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0523700-02	Rice	cytosol	78.48	65.26
Os07t0523500-02	Rice	cytosol	78.48	65.26
Os07t0523300-01	Rice	cytosol	78.48	65.26
Bra001911.1-P	Field mustard	cytosol	83.54	62.86
Bra010760.1-P	Field mustard	cytosol	83.54	62.86
Bra014945.1-P	Field mustard	cytosol	83.54	62.86
Bra033491.1-P	Field mustard	cytosol	83.54	62.86
PGSC0003DMT400046603	Potato	cytosol	79.75	60.0
VIT_13s0064g00880.t01	Wine grape	cytosol	79.75	60.0
Solyc06g071530.2.1	Tomato	nucleus	79.75	60.0
Solyc03g112850.2.1	Tomato	cytosol	79.75	60.0
PGSC0003DMT400069671	Potato	cytosol	79.75	60.0
KRH58331	Soybean	cytosol	79.75	60.0
KRH42207	Soybean	cytosol	79.75	60.0
KRH43933	Soybean	cytosol	79.75	60.0
KRH10493	Soybean	nucleus	79.75	60.0
Os07t0450000-01	Rice	cytosol	78.48	59.05
Os07t0523100-00	Rice	plastid	78.48	59.05
Os07t0523150-00	Rice	cytosol	78.48	59.05
Zm00001d021652_P001	Maize	cytosol	78.48	59.05
Zm00001d006510_P001	Maize	plasma membrane	78.48	59.05
EER96597	Sorghum	cytosol	78.48	59.05
TraesCS7D01G443900.1	Wheat	cytosol	77.22	58.1
TraesCS7A01G454800.1	Wheat	cytosol	77.22	58.1
TraesCS7A01G454700.1	Wheat	cytosol	77.22	58.1
TraesCS5D01G425600.1	Wheat	cytosol	77.22	58.1
TraesCS5B01G320300.1	Wheat	cytosol	77.22	58.1
TraesCS5A01G417600.1	Wheat	cytosol	77.22	58.1
TraesCS5A01G320100.1	Wheat	cytosol	77.22	58.1
TraesCS2D01G226100.1	Wheat	cytosol	77.22	58.1
GSMUA_Achr9P24920_001	Banana	cytosol	78.48	54.87
VIT_01s0011g02090.t01	Wine grape	cytosol	79.75	50.81
TraesCS5B01G419800.1	Wheat	cytosol	77.22	46.56
Zm00001d028202_P001	Maize	cytosol	54.43	43.43
OQU90027	Sorghum	cytosol	53.16	42.86
PGSC0003DMT400050885	Potato	cytosol	79.75	40.91
Zm00001d019562_P003	Maize	cytosol	78.48	40.79
Solyc03g123940.1.1	Tomato	cytosol	46.84	40.66
TraesCS2B01G246000.1	Wheat	golgi	77.22	38.85
HORVU5Hr1G081590.1	Barley	cytosol, plastid	77.22	37.65
HORVU5Hr1G101600.1	Barley	cytosol, nucleus, plastid	77.22	37.2
HORVU7Hr1G104300.1	Barley	nucleus	77.22	35.47
HORVU2Hr1G045920.1	Barley	cytosol, plastid	77.22	33.7
AT4G14320.2	Thale cress	cytosol	62.03	31.82
TraesCS5D01G326000.2	Wheat	cytosol, nucleus	60.76	22.64
PGSC0003DMT400021706	Potato	nucleus	75.95	20.91
VIT_01s0011g02080.t01	Wine grape	nucleus, plastid	79.75	17.9

Protein Annotations

MapMan:17.1.2.1.38	Gene3D:3.10.450.80	EnsemblPlantsGene:Bra023728	EnsemblPlants:Bra023728.1	EnsemblPlants:Bra023728.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	UniProt:M4E4M5	PFAM:PD002841	PFAM:PF00935	ScanProsite:PS01172
PANTHER:PTHR10369	InterPro:Ribosomal_L44e	InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829	UniParc:UPI0002543D87	:

Description

AT3G23390 (E=2e-033) | 60S ribosomal protein L36a/L44 (RPL36aA)

Coordinates

chrA01:-:19415380..19415787

Molecular Weight (calculated)

9133.2 Da

IEP (calculated)

10.956

GRAVY (calculated)

-1.061

Length

79 amino acids

Sequence
(BLAST)

1: MQEAHIAQGY PIQKRRYDRK QSGYGGQTKP VFHKKAKTTK KIVLRLQCQT CKHFSQHSIK RCKHFEIGGD KKGKGTSLF

Best Arabidopsis Sequence Match ( AT4G14320.1 )
(BLAST)

001: MVNIPKTKNT YCKNKECKKH TLHKVTQYKK GKDSLAAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLQCQSCKHF SQRPIKRCKH FEIGGDKKGK
101: GTSLF

Arabidopsis Description

Zinc-binding ribosomal protein family protein [Source:UniProtKB/TrEMBL;Acc:F4JUQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.