Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078136 | Potato | nucleus | 94.53 | 93.26 |
| KRH56661 | Soybean | nucleus | 59.45 | 57.49 |
| KRH03776 | Soybean | nucleus | 59.0 | 57.3 |
| VIT_11s0016g04600.t01 | Wine grape | nucleus | 59.45 | 56.74 |
| KRH63037 | Soybean | nucleus | 57.63 | 54.76 |
| KRH54846 | Soybean | nucleus | 57.18 | 53.75 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 48.06 | 50.0 |
| Bra026548.1-P | Field mustard | nucleus | 46.47 | 48.34 |
| CDY02988 | Canola | nucleus | 46.47 | 48.23 |
| Bra025115.1-P | Field mustard | nucleus | 46.24 | 47.99 |
| AT2G03500.1 | Thale cress | nucleus | 47.15 | 47.92 |
| CDY51214 | Canola | nucleus | 46.01 | 47.75 |
| GSMUA_Achr10P... | Banana | nucleus | 41.91 | 46.12 |
| CDY71874 | Canola | nucleus | 36.45 | 44.32 |
| CDY70722 | Canola | nucleus | 30.98 | 44.3 |
| Os01t0176700-01 | Rice | nucleus | 43.51 | 40.04 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 42.6 | 39.62 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 42.14 | 39.19 |
| TraesCS3D01G125300.1 | Wheat | nucleus | 42.14 | 39.19 |
| EES02372 | Sorghum | nucleus | 42.6 | 37.25 |
| HORVU3Hr1G022960.5 | Barley | nucleus | 42.14 | 35.51 |
| Zm00001d039637_P001 | Maize | nucleus | 42.37 | 34.7 |
| Solyc01g108300.2.1 | Tomato | nucleus | 31.44 | 34.07 |
| Solyc02g090400.2.1 | Tomato | nucleus | 27.79 | 32.88 |
| Solyc05g009720.2.1 | Tomato | nucleus | 29.16 | 32.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009266 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010452 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0048579 | GO:GO:1903507 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K4DBL7 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF3 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc12g006800.1 | EnsemblPlants:Solyc12g006800.1.1 | TIGRFAMs:TIGR01557 | UniParc:UPI000276A95F |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:1221133..1223691
Molecular Weight (calculated)
48724.6 Da
IEP (calculated)
7.168
GRAVY (calculated)
-0.861
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMASSNSEL SLECKPHQSY SMLLKSFGEK NVDQTQNLEE FLTRLEEERV KIDAFKRELP LCMQLLTNAM EASRQQLHSH RENNHIGQMR PVLEEFIPLK
101: NNNASVELGD EKLVANNTST IVDNKANWMT SAQLWSPPSD HQETKQQVQI STTCNKENDH HNNIGFSIAS KLALDNNNSS CPSPTTLALA SSNKQNNNET
201: LLQVEDNNKN LEIQQDSQGI GGGTNSTSTS TQQQQPHRKA RRCWSPDLHR RFVNALQMLG GSQVATPKQI RELMKVDGLT NDEVKSHLQK YRLHTRRPSP
301: SPQATTAPPH LVVLGGIWVP PEYAAAAAHG GAPPTATFYG PHSTSHAPSP HYIAAPQALA QEFYNTPQPL QTLHHQQLYH PGSHMYKPSP KAHSHSSPES
401: DARGTGQHGD RSSESIEDGK SESYSSENGG ERKVVVHKF
101: NNNASVELGD EKLVANNTST IVDNKANWMT SAQLWSPPSD HQETKQQVQI STTCNKENDH HNNIGFSIAS KLALDNNNSS CPSPTTLALA SSNKQNNNET
201: LLQVEDNNKN LEIQQDSQGI GGGTNSTSTS TQQQQPHRKA RRCWSPDLHR RFVNALQMLG GSQVATPKQI RELMKVDGLT NDEVKSHLQK YRLHTRRPSP
301: SPQATTAPPH LVVLGGIWVP PEYAAAAAHG GAPPTATFYG PHSTSHAPSP HYIAAPQALA QEFYNTPQPL QTLHHQQLYH PGSHMYKPSP KAHSHSSPES
401: DARGTGQHGD RSSESIEDGK SESYSSENGG ERKVVVHKF
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.