CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039637_P001	Maize	nucleus	89.04	83.4
TraesCS3D01G125300.1	Wheat	nucleus	65.54	69.7
TraesCS3A01G123700.1	Wheat	nucleus	65.14	69.28
TraesCS3B01G144100.1	Wheat	nucleus	64.54	68.64
Os01t0176700-01	Rice	nucleus	63.35	66.67
HORVU3Hr1G022960.5	Barley	nucleus	65.74	63.34
GSMUA_Achr6P05330_001	Banana	nucleus	45.62	54.27
GSMUA_Achr10P...	Banana	nucleus	38.05	47.87
KRH03776	Soybean	nucleus	42.03	46.68
VIT_11s0016g04600.t01	Wine grape	nucleus	42.43	46.3
KRH56661	Soybean	nucleus	41.83	46.26
KRH54846	Soybean	nucleus	41.24	44.33
PGSC0003DMT400078136	Potato	nucleus	37.85	42.7
KRH63037	Soybean	nucleus	39.24	42.64
Solyc12g006800.1.1	Tomato	nucleus	37.25	42.6
Bra026548.1-P	Field mustard	nucleus	35.46	42.18
CDY51214	Canola	nucleus	35.26	41.84
CDY02988	Canola	nucleus	35.06	41.61
Bra025115.1-P	Field mustard	nucleus	34.86	41.37
AT2G03500.1	Thale cress	nucleus	35.46	41.2
CDY71874	Canola	nucleus	29.48	41.0
CDY70722	Canola	nucleus	24.7	40.39
KXG37487	Sorghum	nucleus	21.51	31.58
EER95793	Sorghum	nucleus	23.71	30.28
EES15678	Sorghum	nucleus	25.5	27.71
OQU79454	Sorghum	nucleus	20.92	25.8

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EntrezGene:8056535	UniProt:C5XMT5	ncoils:Coil	EnsemblPlants:EES02372
ProteinID:EES02372	ProteinID:EES02372.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628	GO:GO:0009719
GO:GO:0009740	GO:GO:0009791	GO:GO:0009987	GO:GO:0010452	GO:GO:0016043	GO:GO:0019538
GO:GO:0048579	GO:GO:1903507	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF3	InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3003G046800
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0001A8504A	RefSeq:XP_002457252.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:4273811..4276922

Molecular Weight (calculated)

52729.5 Da

IEP (calculated)

5.880

GRAVY (calculated)

-0.544

Length

502 amino acids

Sequence
(BLAST)

001: MASSPSDLTL DYKPNGNAAA YAVTIPKPQQ EPLVDGHHHH HHLTTAEQAT QKLREFLARL EEEWLKIDAF KRELPLCMQL LNHAMESYRQ QLEAYQMGSL
101: QGAPARPLVL EEFMPLKNIG IDAAAADKMG NPPSEKASWM ESAQLWNGPA AATAADMAAK GPQTPKESSE HPLPIDTLCA HDAAAAGQRN GGGAFLPFAK
201: DKTASAAEGA ALPELALAPA DKDAGDAERK PYLDASSNNG VLGARRDVVQ NGVKPGTNAP EGQQAAATPP PQTHRKARRC WSPELHRRFV NALQILGGAQ
301: VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPMPAPP APATAAPQLV VLGGIWVPPE YATQAAGQAI YGAHPATQPH YTAAVAAQEY YPSPAAVHHL
401: QHHPAAAAAA MVHRAAAAPQ QAAYKAAAAA MAGSPPGSEG RGSAGGGSVG GGGGGRERSE SIEEEGEGEE REEDDDDDDD DMAAAKADGE EAAAGAGAGV
501: KY

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.