Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02988 | Canola | nucleus | 87.5 | 89.36 |
| CDY51214 | Canola | nucleus | 86.57 | 88.42 |
| Bra025115.1-P | Field mustard | nucleus | 86.34 | 88.18 |
| Bra026548.1-P | Field mustard | nucleus | 84.49 | 86.49 |
| CDY70722 | Canola | nucleus | 61.11 | 85.99 |
| CDY71874 | Canola | nucleus | 70.6 | 84.49 |
| KRH03776 | Soybean | nucleus | 54.63 | 52.21 |
| KRH56661 | Soybean | nucleus | 53.94 | 51.32 |
| VIT_11s0016g04600.t01 | Wine grape | nucleus | 53.94 | 50.65 |
| KRH63037 | Soybean | nucleus | 52.08 | 48.7 |
| KRH54846 | Soybean | nucleus | 52.55 | 48.61 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 46.76 | 47.87 |
| Solyc12g006800.1.1 | Tomato | nucleus | 47.92 | 47.15 |
| PGSC0003DMT400078136 | Potato | nucleus | 48.15 | 46.74 |
| GSMUA_Achr10P... | Banana | nucleus | 39.81 | 43.11 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 40.97 | 37.5 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 40.74 | 37.29 |
| TraesCS3D01G125300.1 | Wheat | nucleus | 40.74 | 37.29 |
| EES02372 | Sorghum | nucleus | 41.2 | 35.46 |
| Os01t0176700-01 | Rice | nucleus | 39.12 | 35.43 |
| HORVU3Hr1G022960.5 | Barley | nucleus | 40.28 | 33.4 |
| Zm00001d039637_P001 | Maize | nucleus | 40.97 | 33.02 |
| AT1G25550.1 | Thale cress | nucleus | 25.0 | 31.4 |
| AT1G49560.1 | Thale cress | nucleus | 24.07 | 31.23 |
| AT1G13300.1 | Thale cress | nucleus | 24.54 | 30.81 |
| AT1G68670.1 | Thale cress | nucleus | 24.77 | 30.23 |
| AT4G37180.2 | Thale cress | nucleus | 23.15 | 27.55 |
| AT3G25790.1 | Thale cress | nucleus | 22.45 | 27.17 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | EntrezGene:814878 | ProteinID:AAD17450.2 | ProteinID:AEC05707.1 | EMBL:AK221662 |
| ArrayExpress:AT2G03500 | EnsemblPlantsGene:AT2G03500 | RefSeq:AT2G03500 | TAIR:AT2G03500 | RefSeq:AT2G03500-TAIR-G | EnsemblPlants:AT2G03500.1 |
| TAIR:AT2G03500.1 | EMBL:AY060559 | EMBL:AY133630 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009266 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010452 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0048579 |
| GO:GO:1903507 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_027544.1 |
| PFAM:PF00249 | PO:PO:0000293 | PO:PO:0005417 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 |
| PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF3 | UniProt:Q9ZQ85 | InterPro:SANT/Myb | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | UniParc:UPI00000A30F1 | SEG:seg | : | : | : |
Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
Coordinates
chr2:+:1059545..1062679
Molecular Weight (calculated)
47964.4 Da
IEP (calculated)
7.126
GRAVY (calculated)
-0.975
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.