CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRH67075

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03500.1	KRG95394	AT5G22355.1	21798944
AT2G03500.1	KRH67075	AT5G22355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56661	Soybean	nucleus	93.58	93.17
KRH54846	Soybean	nucleus	72.79	70.45
KRH63037	Soybean	nucleus	71.9	70.35
VIT_11s0016g04600.t01	Wine grape	nucleus	68.81	67.61
GSMUA_Achr6P05330_001	Banana	nucleus	56.64	60.66
Solyc12g006800.1.1	Tomato	nucleus	57.3	59.0
PGSC0003DMT400078136	Potato	nucleus	55.97	56.85
Bra026548.1-P	Field mustard	nucleus	51.77	55.45
CDY02988	Canola	nucleus	51.55	55.08
CDY51214	Canola	nucleus	51.55	55.08
GSMUA_Achr10P...	Banana	nucleus	48.23	54.64
AT2G03500.1	Thale cress	nucleus	52.21	54.63
Bra025115.1-P	Field mustard	nucleus	51.11	54.61
CDY70722	Canola	nucleus	36.28	53.42
CDY71874	Canola	nucleus	40.93	51.25
TraesCS3B01G144100.1	Wheat	nucleus	47.12	45.13
TraesCS3D01G125300.1	Wheat	nucleus	46.9	44.92
TraesCS3A01G123700.1	Wheat	nucleus	46.9	44.92
Os01t0176700-01	Rice	nucleus	45.35	42.98
EES02372	Sorghum	nucleus	46.68	42.03
HORVU3Hr1G022960.5	Barley	nucleus	46.02	39.92
Zm00001d039637_P001	Maize	nucleus	45.8	38.62
KRH71185	Soybean	nucleus	30.97	33.82
KRH50234	Soybean	nucleus	30.75	33.74
KRG89233	Soybean	nucleus	27.43	33.7
KRH49770	Soybean	nucleus	26.77	32.97
KRH34759	Soybean	nucleus	27.88	32.9
KRH28514	Soybean	nucleus	24.78	32.75
KRG92028	Soybean	nucleus	26.77	31.76
KRH75476	Soybean	nucleus	26.55	31.66
KRH70595	Soybean	nucleus	25.89	31.54
KRH04674	Soybean	nucleus	24.11	29.86
KRH76947	Soybean	nucleus	24.11	29.7

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100797015	MapMan:15.5.2.3	EMBL:ACUP02010361	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G119600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1MUC8	InterPro:IPR017930
EnsemblPlants:KRH03776	ProteinID:KRH03776	ProteinID:KRH03776.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF3	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI000233EDDF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:9458535..9461660

Molecular Weight (calculated)

49579.3 Da

IEP (calculated)

7.943

GRAVY (calculated)

-0.760

Length

452 amino acids

Sequence
(BLAST)

001: MESPSELSLD CKPQSYSLLL KSFGDQTDQT YKLEEFLSRL EEERLKIDAF KRELPLCMQL LTNAMEASRQ QLQAYKVNHG TKPVLEEFIP MKHLASDQSS
101: EKATNMSDKA NWMTSAQLWS QASEGTKQQP TITTPKESDI GFSISPKLAL DNKQRNGGGA FLPFSKERNS CQGSTLRPLP ELALAYAEKE MEDKKLRPEV
201: EIKGVSCQSK KENSGSDGTV VDQGKGGSPV ASSHATTTTT TSSAQTHRKA RRCWSPDLHR RFVNALQMLG GSQVATPKQI RELMKVDGLT NDEVKSHLQK
301: YRLHTRRPSP SPQAVGAAPQ LVVLGGIWVP PEYATAAHTA TPTLYGAHPT SHAPPPHYCA ATPMPQDFYT TAPPQPLLPP PPPHHNALHH LHMYKAAPHG
401: QGSPESDVPS NGERSESIED GKSESSSWKG ENEGERKGIS KGSNGSEITL KF

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.