Factsheet for Zm00001d039637_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02372	Sorghum	nucleus	83.4	89.04
TraesCS3D01G125300.1	Wheat	nucleus	60.07	68.22
TraesCS3A01G123700.1	Wheat	nucleus	59.33	67.37
TraesCS3B01G144100.1	Wheat	nucleus	58.96	66.95
Os01t0176700-01	Rice	nucleus	56.9	63.94
HORVU3Hr1G022960.5	Barley	nucleus	61.94	63.72
GSMUA_Achr6P05330_001	Banana	nucleus	42.16	53.55
GSMUA_Achr10P...	Banana	nucleus	34.7	46.62
KRH03776	Soybean	nucleus	38.62	45.8
KRH56661	Soybean	nucleus	38.43	45.37
VIT_11s0016g04600.t01	Wine grape	nucleus	38.62	45.0
KRH54846	Soybean	nucleus	37.87	43.47
PGSC0003DMT400078136	Potato	nucleus	35.26	42.47
Solyc12g006800.1.1	Tomato	nucleus	34.7	42.37
KRH63037	Soybean	nucleus	36.01	41.77
Bra026548.1-P	Field mustard	nucleus	32.65	41.47
CDY51214	Canola	nucleus	32.65	41.37
CDY02988	Canola	nucleus	32.46	41.13
AT2G03500.1	Thale cress	nucleus	33.02	40.97
Bra025115.1-P	Field mustard	nucleus	32.28	40.9
CDY71874	Canola	nucleus	26.68	39.61
CDY70722	Canola	nucleus	22.2	38.76
Zm00001d007962_P001	Maize	extracellular, nucleus	22.57	35.07
Zm00001d034160_P001	Maize	nucleus	20.71	32.84
Zm00001d018698_P001	Maize	nucleus	22.01	31.98
Zm00001d013202_P001	Maize	nucleus	20.15	29.83
Zm00001d023411_P001	Maize	nucleus	24.44	28.92
Zm00001d023402_P001	Maize	nucleus	24.63	28.76
Zm00001d030891_P001	Maize	nucleus	19.22	28.14

Protein Annotations

MapMan:15.5.2.3	UniProt:A0A1D6MJX4	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628
GO:GO:0009719	GO:GO:0009740	GO:GO:0009791	GO:GO:0009987	GO:GO:0010452	GO:GO:0016043
GO:GO:0019538	GO:GO:0048579	GO:GO:1903507	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	ProteinID:ONM29562.1
PANTHER:PTHR31003	PANTHER:PTHR31003:SF3	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000842C27F	EnsemblPlantsGene:Zm00001d039637
EnsemblPlants:Zm00001d039637_P001	EnsemblPlants:Zm00001d039637_T001	SEG:seg	:	:	:

Description

G2-like-transcription factor 14Myb family transcription factor EFM

Coordinates

chr3:-:9819488..9821687

Molecular Weight (calculated)

56318.0 Da

IEP (calculated)

6.471

GRAVY (calculated)

-0.537

Length

536 amino acids

Sequence
(BLAST)

001: MASSPSDLTL DYKPNGNGAA YAVTTPKPPQ ETLVVDGHHH HHHLTAAEQT TQKLREFLAR LEEERLKIDA FKRELPLCMQ LLNHAMESYR QQLEAYQMGS
101: LQGAPARPLV LEEFMPLKNI GIDAAADKMG NPTSEKASWM ESAQLWNGPA ATADVAARGP QTPKESAECA HGAAGAGHGQ RNGGGGGGAF LPFAKDKTAS
201: AAEGAALPEL ALAPADKDAA DADRKPYLDA AAGSNNGGVL GSRRDAVQSG VVNVKPAPNA PEGQQAAPPQ THRKARRCWS PELHRRFVNA LQILGGAQGT
301: DTGMPQTLCY VRQNAKRMHA CPMIMTNNTC FLLAKVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP MPAPPAPATA APQLVVLGGI WVPPEYASQA
401: AGQAIYGAHP ATQPHYTAAA AQEYYPSPAA VHHLQHHPAA AAMVHRAAAA PPPPQQAAYS KAAAMAGSPP GSEGRGSAGG GSIGGGGGRE RSESIEEEGE
501: VEEREEDDED DDDDMTANKA DGEGAAAGAG VGAAMY

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.