Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY41709 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G03500.1 | CDY41709 | AT5G22355.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025115.1-P | Field mustard | nucleus | 98.82 | 98.82 |
| CDY02988 | Canola | nucleus | 97.64 | 97.64 |
| CDY70722 | Canola | nucleus | 62.88 | 86.64 |
| AT2G03500.1 | Thale cress | nucleus | 88.42 | 86.57 |
| CDY71874 | Canola | nucleus | 72.1 | 84.49 |
| KRH03776 | Soybean | nucleus | 55.08 | 51.55 |
| KRH56661 | Soybean | nucleus | 54.14 | 50.44 |
| VIT_11s0016g04600.t01 | Wine grape | nucleus | 54.85 | 50.43 |
| KRH54846 | Soybean | nucleus | 53.43 | 48.39 |
| KRH63037 | Soybean | nucleus | 52.48 | 48.05 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 47.75 | 47.87 |
| Solyc12g006800.1.1 | Tomato | nucleus | 47.75 | 46.01 |
| PGSC0003DMT400078136 | Potato | nucleus | 47.99 | 45.62 |
| GSMUA_Achr10P... | Banana | nucleus | 41.37 | 43.86 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 42.08 | 37.71 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 41.84 | 37.5 |
| TraesCS3D01G125300.1 | Wheat | nucleus | 41.84 | 37.5 |
| CDY40421 | Canola | nucleus | 13.71 | 35.58 |
| EES02372 | Sorghum | nucleus | 41.84 | 35.26 |
| Os01t0176700-01 | Rice | nucleus | 39.72 | 35.22 |
| CDY42715 | Canola | nucleus | 24.11 | 34.69 |
| CDX69259 | Canola | nucleus | 26.0 | 34.16 |
| CDY59732 | Canola | nucleus | 20.57 | 33.98 |
| CDX75610 | Canola | nucleus | 25.77 | 33.54 |
| HORVU3Hr1G022960.5 | Barley | nucleus | 40.9 | 33.21 |
| Zm00001d039637_P001 | Maize | nucleus | 41.37 | 32.65 |
| CDY44057 | Canola | nucleus | 24.59 | 32.4 |
| CDY72117 | Canola | nucleus | 13.95 | 32.24 |
| CDY51048 | Canola | nucleus | 22.46 | 31.56 |
| CDY50179 | Canola | nucleus | 25.53 | 31.21 |
| CDY51129 | Canola | nucleus | 23.4 | 30.94 |
| CDY21091 | Canola | nucleus | 25.3 | 30.92 |
| CDX95998 | Canola | nucleus | 26.24 | 30.92 |
| CDY20522 | Canola | nucleus | 24.11 | 30.91 |
| CDY19382 | Canola | nucleus | 24.59 | 30.59 |
| CDX97993 | Canola | nucleus | 24.82 | 30.43 |
| CDX83554 | Canola | nucleus | 25.3 | 30.23 |
| CDY38609 | Canola | nucleus | 25.77 | 30.19 |
| CDX81535 | Canola | nucleus | 24.35 | 30.03 |
| CDY54503 | Canola | nucleus | 26.0 | 29.89 |
| CDY13584 | Canola | nucleus | 25.06 | 29.69 |
| CDY04180 | Canola | nucleus | 23.4 | 29.38 |
| CDY16075 | Canola | nucleus | 24.11 | 29.23 |
| CDY71327 | Canola | nucleus | 22.7 | 28.74 |
| CDY39188 | Canola | nucleus | 23.64 | 28.74 |
| CDX69206 | Canola | nucleus | 9.46 | 25.64 |
| CDY22459 | Canola | nucleus | 23.4 | 24.32 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 11.58 | 24.26 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078IP84 | UniProt:A0A078IP84 | EnsemblPlants:CDY51214 | ProteinID:CDY51214 |
| ProteinID:CDY51214.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00002968001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF3 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EF2241 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g39930DBnaA06g39930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IP84]
Coordinates
chrLK032975:-:76629..79529
Molecular Weight (calculated)
46827.3 Da
IEP (calculated)
7.107
GRAVY (calculated)
-0.899
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD QTTQKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYLA NNNNQSVVTR PVLEEFIPLR
101: NQPEKANNWM TTAQLWSQPE TKPKSIDQTT DQSPKDELAS SPKLGHVDAK QRNGGGAFHP FTKEQHLPEL ALSTEVKRFS PTNEHTNDHG NDESIINSGK
201: KNNNNINSNS NGVSSTTNQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG GQGPHLVVLG
301: GIWVPPEYTT AHGGTPTLYH HQVHHHNGNA ATQPPQHFCS SQEFYTTPPT PQPLHHQHFQ TFNGSSAGGA ASNDSAHHQL TDSAADEGKS LESGGGEGKG
401: LAALRQEGED QSNINGSEIT LKF
101: NQPEKANNWM TTAQLWSQPE TKPKSIDQTT DQSPKDELAS SPKLGHVDAK QRNGGGAFHP FTKEQHLPEL ALSTEVKRFS PTNEHTNDHG NDESIINSGK
201: KNNNNINSNS NGVSSTTNQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG GQGPHLVVLG
301: GIWVPPEYTT AHGGTPTLYH HQVHHHNGNA ATQPPQHFCS SQEFYTTPPT PQPLHHQHFQ TFNGSSAGGA ASNDSAHHQL TDSAADEGKS LESGGGEGKG
401: LAALRQEGED QSNINGSEIT LKF
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.