Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59732 | Canola | nucleus | 77.23 | 60.94 |
| Bra040662.1-P | Field mustard | nucleus | 91.09 | 56.44 |
| CDY71327 | Canola | nucleus | 58.91 | 35.63 |
| CDY51048 | Canola | nucleus | 52.97 | 35.55 |
| AT1G49560.1 | Thale cress | nucleus | 49.51 | 30.03 |
| KRG89233 | Soybean | nucleus | 29.7 | 16.3 |
| KRH49770 | Soybean | nucleus | 28.71 | 15.8 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 28.22 | 15.04 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 29.21 | 14.71 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 24.26 | 14.67 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 23.27 | 14.6 |
| GSMUA_Achr10P... | Banana | nucleus | 27.23 | 14.18 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 26.24 | 13.98 |
| KRH71185 | Soybean | nucleus | 28.22 | 13.77 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 22.77 | 13.57 |
| CDX83554 | Canola | nucleus | 23.76 | 13.56 |
| GSMUA_Achr10P... | Banana | nucleus | 26.24 | 13.55 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 22.77 | 13.53 |
| CDY40421 | Canola | nucleus | 10.89 | 13.5 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 24.26 | 13.39 |
| KRH50234 | Soybean | nucleus | 27.23 | 13.35 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 25.74 | 13.27 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 24.26 | 13.17 |
| CDY13584 | Canola | nucleus | 22.77 | 12.89 |
| Zm00001d034160_P001 | Maize | nucleus | 21.29 | 12.72 |
| CDX75610 | Canola | nucleus | 20.3 | 12.62 |
| CDY04180 | Canola | nucleus | 20.79 | 12.46 |
| KXG37487 | Sorghum | nucleus | 20.79 | 12.28 |
| CDY42715 | Canola | nucleus | 17.82 | 12.24 |
| PGSC0003DMT400066352 | Potato | nucleus | 24.26 | 12.19 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 20.79 | 12.17 |
| Zm00001d013202_P001 | Maize | nucleus | 21.78 | 12.15 |
| Os07t0119300-01 | Rice | nucleus | 21.29 | 12.11 |
| CDX69259 | Canola | nucleus | 19.31 | 12.11 |
| Solyc01g108300.2.1 | Tomato | nucleus | 24.26 | 12.1 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 20.79 | 11.83 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 20.79 | 11.8 |
| CDY39188 | Canola | nucleus | 20.3 | 11.78 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 19.31 | 11.68 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 19.31 | 11.68 |
| CDY51214 | Canola | nucleus | 24.26 | 11.58 |
| CDY02988 | Canola | nucleus | 24.26 | 11.58 |
| CDY44057 | Canola | nucleus | 18.32 | 11.53 |
| CDY72117 | Canola | nucleus | 10.4 | 11.48 |
| CDY20522 | Canola | nucleus | 18.32 | 11.21 |
| Os03t0764600-01 | Rice | nucleus | 19.31 | 11.21 |
| CDX95998 | Canola | nucleus | 19.8 | 11.14 |
| Zm00001d018698_P001 | Maize | nucleus | 20.3 | 11.11 |
| CDX81535 | Canola | nucleus | 18.81 | 11.08 |
| CDY21091 | Canola | nucleus | 18.32 | 10.69 |
| CDY50179 | Canola | nucleus | 18.32 | 10.69 |
| EER95793 | Sorghum | nucleus | 20.79 | 10.69 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 19.8 | 10.67 |
| CDY16075 | Canola | nucleus | 18.32 | 10.6 |
| CDY54503 | Canola | nucleus | 19.31 | 10.6 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 19.8 | 10.58 |
| CDY38609 | Canola | nucleus | 18.81 | 10.53 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 20.79 | 10.45 |
| CDX97993 | Canola | nucleus | 17.82 | 10.43 |
| Os12t0586300-00 | Rice | extracellular | 20.3 | 10.38 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 19.31 | 10.32 |
| CDY51129 | Canola | nucleus | 16.34 | 10.31 |
| CDY19382 | Canola | nucleus | 17.33 | 10.29 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 18.81 | 10.08 |
| HORVU2Hr1G062670.3 | Barley | plastid | 20.79 | 9.7 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 2.97 | 9.52 |
| TraesCS5D01G411800.1 | Wheat | plastid | 18.32 | 9.39 |
| CDY22459 | Canola | nucleus | 18.32 | 9.09 |
| Zm00001d030891_P001 | Maize | nucleus | 15.35 | 8.47 |
| OQU79454 | Sorghum | nucleus | 16.34 | 8.11 |
| HORVU2Hr1G006350.1 | Barley | plastid | 4.95 | 7.46 |
| CDY71874 | Canola | nucleus | 12.87 | 7.2 |
| HORVU6Hr1G034270.1 | Barley | plastid | 4.46 | 6.72 |
| CDY70722 | Canola | nucleus | 8.91 | 5.86 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 11.88 | 5.26 |
| Os03t0241001-00 | Rice | plastid | 3.47 | 4.86 |
| CDX69206 | Canola | nucleus | 1.49 | 1.92 |
Protein Annotations
| EnsemblPlants:CDY29342 | EnsemblPlantsGene:GSBRNA2T00042907001 | ncoils:Coil | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF7 | ProteinID:CDY29342 |
| ProteinID:CDY29342.1 | UniParc:UPI0004EE3214 | UniProt:A0A078GW38 | MapMan:35.1 | : | : |
Description
BnaA05g16090DBnaA05g16090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW38]
Coordinates
chrLK032235:-:321586..322371
Molecular Weight (calculated)
23420.3 Da
IEP (calculated)
6.939
GRAVY (calculated)
-0.487
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGDELSL GQRRHSSIPT TICRSKIMNV AVEQGCKLEE HVQKLEEEKR KIQGSELELP LCLQMLNDAI SYLKKETETD TQPLLKDFIS LSKPFREEHD
101: EELFKEKKFQ LWRENDHISN ARFSDTLEIE RDDEKSSNSL YMLLSPGMTT PKVETGLGLG LTSSSMVKGR RKLVASSSMF VSYLFYLFFK RKYELVFFFL
201: KQ
101: EELFKEKKFQ LWRENDHISN ARFSDTLEIE RDDEKSSNSL YMLLSPGMTT PKVETGLGLG LTSSSMVKGR RKLVASSSMF VSYLFYLFFK RKYELVFFFL
201: KQ
001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQVTKKKQKV EIFESYSECY
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQVTKKKQKV EIFESYSECY
Arabidopsis Description
HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.