Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P28210_001 | Banana | nucleus | 48.24 | 50.93 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 47.65 | 47.79 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 51.18 | 46.77 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 46.76 | 43.44 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 42.35 | 43.11 |
| GSMUA_Achr10P... | Banana | nucleus | 48.82 | 42.78 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 47.65 | 42.74 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 47.35 | 41.07 |
| GSMUA_Achr10P... | Banana | nucleus | 46.76 | 40.66 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 43.53 | 39.05 |
| KXG37487 | Sorghum | nucleus | 38.24 | 38.01 |
| Zm00001d034160_P001 | Maize | nucleus | 37.06 | 37.28 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 38.24 | 36.62 |
| HORVU2Hr1G006350.1 | Barley | plastid | 14.41 | 36.57 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 38.24 | 36.52 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 36.76 | 36.23 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 35.59 | 36.23 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 35.0 | 35.63 |
| CDY59732 | Canola | nucleus | 26.47 | 35.16 |
| HORVU6Hr1G034270.1 | Barley | plastid | 13.82 | 35.07 |
| Zm00001d018698_P001 | Maize | nucleus | 37.65 | 34.69 |
| Zm00001d013202_P001 | Maize | nucleus | 36.76 | 34.53 |
| CDY40421 | Canola | nucleus | 16.47 | 34.36 |
| KRG89233 | Soybean | nucleus | 35.88 | 33.15 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 39.12 | 33.08 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 36.47 | 33.07 |
| Os07t0119300-01 | Rice | nucleus | 34.41 | 32.96 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 36.47 | 32.89 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 36.47 | 32.8 |
| CDY72117 | Canola | nucleus | 17.65 | 32.79 |
| Os03t0764600-01 | Rice | nucleus | 33.53 | 32.76 |
| KRH49770 | Soybean | nucleus | 34.71 | 32.15 |
| EER95793 | Sorghum | nucleus | 37.06 | 32.06 |
| CDY51048 | Canola | nucleus | 28.24 | 31.89 |
| Bra018794.1-P | Field mustard | nucleus | 28.24 | 31.79 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 35.29 | 31.75 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 37.35 | 31.67 |
| CDX75610 | Canola | nucleus | 30.0 | 31.38 |
| Os03t0241001-00 | Rice | plastid | 13.24 | 31.25 |
| CDX69259 | Canola | nucleus | 29.41 | 31.06 |
| Bra040662.1-P | Field mustard | nucleus | 29.71 | 30.98 |
| TraesCS5D01G411800.1 | Wheat | plastid | 35.88 | 30.96 |
| Zm00001d030891_P001 | Maize | nucleus | 33.24 | 30.87 |
| CDY42715 | Canola | nucleus | 26.47 | 30.61 |
| Bra017795.1-P | Field mustard | nucleus | 26.47 | 30.61 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 34.71 | 30.57 |
| Bra011720.1-P | Field mustard | nucleus | 29.12 | 30.46 |
| GSMUA_Achr10P... | Banana | nucleus | 27.65 | 30.32 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 23.53 | 30.19 |
| PGSC0003DMT400026096 | Potato | nucleus | 32.35 | 30.14 |
| Bra010581.1-P | Field mustard | nucleus | 27.65 | 30.13 |
| KRH28514 | Soybean | nucleus | 30.29 | 30.12 |
| KRH50234 | Soybean | nucleus | 36.47 | 30.1 |
| HORVU2Hr1G062670.3 | Barley | plastid | 38.24 | 30.02 |
| KRH71185 | Soybean | nucleus | 36.47 | 29.95 |
| CDY44057 | Canola | nucleus | 28.24 | 29.91 |
| OQU79454 | Sorghum | nucleus | 35.59 | 29.73 |
| Solyc02g090400.2.1 | Tomato | nucleus | 32.35 | 29.65 |
| AT1G49560.1 | Thale cress | nucleus | 28.82 | 29.43 |
| Os12t0586300-00 | Rice | extracellular | 34.12 | 29.37 |
| CDY71327 | Canola | nucleus | 28.82 | 29.34 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 28.82 | 28.82 |
| KRH04674 | Soybean | nucleus | 30.59 | 28.49 |
| Solyc01g108300.2.1 | Tomato | nucleus | 32.94 | 27.65 |
| PGSC0003DMT400066352 | Potato | nucleus | 32.65 | 27.61 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 25.0 | 27.6 |
| KRH76947 | Soybean | nucleus | 29.71 | 27.52 |
| AT4G37180.2 | Thale cress | nucleus | 29.12 | 27.27 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 29.41 | 26.95 |
| GSMUA_Achr10P... | Banana | nucleus | 31.18 | 26.57 |
| GSMUA_Achr11P... | Banana | nucleus | 27.65 | 25.47 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 30.59 | 24.64 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 26.76 | 24.4 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 4.41 | 23.81 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 30.88 | 23.03 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 13.53 | 22.77 |
| CDY22459 | Canola | nucleus | 27.06 | 22.6 |
| CDX69206 | Canola | nucleus | 10.29 | 22.44 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 10.88 | 22.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr4G32500_001 | EnsemblPlants:GSMUA_Achr4P32500_001 | EnsemblPlants:GSMUA_Achr4T32500_001 | InterPro:Homeobox-like_sf | UniProt:M0SU12 | InterPro:Myb_dom_plants |
| PFAM:PF00249 | PANTHER:PTHR31003 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000294D2BA |
| SEG:seg | : | : | : | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G32500_001]
Coordinates
chr4:+:29236509..29238194
Molecular Weight (calculated)
36930.1 Da
IEP (calculated)
6.844
GRAVY (calculated)
-0.467
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MIEPAAMGSE VGLALQLCAM RTVGGFVKDA ATESAGRAAR LVESIKILEE EKRKIEAFQR ELPLCMHLLG EVIDGLKKET ERCGGGCFGR VLQELLPVES
101: RVEEDGEVKV DDKMNWMSSA QLWSDNYGEN DISHENHEVM ICGKKKEELF NLFLECKSPG GDGAFLPFEA LSTVSASSEE KKPAAALPDR RGCGRGPKSV
201: GRAPESSPAP ATVCGRLGFQ SQHQPSRKAR RCWSQELHRR FTVAIQQLGV ATPKQIREVM KVEGLTNDEV KSHLQKYRLH AGKLPNASSA MASPPGAVGG
301: SSCVRLQQQC ISPPPQQSVS PSGSLSTEPS SAERSPELYE
101: RVEEDGEVKV DDKMNWMSSA QLWSDNYGEN DISHENHEVM ICGKKKEELF NLFLECKSPG GDGAFLPFEA LSTVSASSEE KKPAAALPDR RGCGRGPKSV
201: GRAPESSPAP ATVCGRLGFQ SQHQPSRKAR RCWSQELHRR FTVAIQQLGV ATPKQIREVM KVEGLTNDEV KSHLQKYRLH AGKLPNASSA MASPPGAVGG
301: SSCVRLQQQC ISPPPQQSVS PSGSLSTEPS SAERSPELYE
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.