Factsheet for GSMUA_Achr4P13650_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr3P18200_001
GSMUA_Achr4P27190_001
GSMUA_Achr5P04520_001
GSMUA_Achr6P25560_001
GSMUA_Achr8P29370_001
GSMUA_Achr9P08680_001
GSMUA_Achr9P13230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT1G68670.1	GSMUA_Achr8P29370_001	AT1G22630.1	21798944
AT1G68670.1	GSMUA_Achr3P18200_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr4P27190_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr5P04520_001	AT3G05530.1	21798944
AT1G68670.1	GSMUA_Achr9P13230_001	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P03680_001	Banana	nucleus	29.7	15.91
GSMUA_Achr1P23220_001	Banana	nucleus	25.45	15.85
GSMUA_Achr7P00660_001	Banana	nucleus	29.7	14.45
GSMUA_Achr10P...	Banana	nucleus	25.45	13.55
GSMUA_Achr10P...	Banana	nucleus	31.52	13.4
CDY04180	Canola	nucleus	27.27	13.35
CDY20522	Canola	nucleus	26.67	13.33
GSMUA_Achr11P...	Banana	nucleus	29.7	13.28
GSMUA_Achr8P18270_001	Banana	nucleus	29.7	13.21
VIT_01s0011g03110.t01	Wine grape	nucleus	28.48	13.2
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	26.67	13.17
GSMUA_Achr2P13380_001	Banana	nucleus	29.09	13.11
GSMUA_Achr10P...	Banana	nucleus	30.91	13.04
AT1G68670.1	Thale cress	nucleus	27.88	12.99
CDY19382	Canola	nucleus	26.67	12.94
GSMUA_Achr6P09870_001	Banana	nucleus	26.67	12.94
GSMUA_Achr6P34680_001	Banana	nucleus	29.7	12.93
Bra004330.1-P	Field mustard	nucleus	27.88	12.81
CDY51129	Canola	nucleus	24.85	12.81
PGSC0003DMT400002162	Potato	nucleus	29.09	12.77
CDX83554	Canola	nucleus	27.27	12.71
KRH70595	Soybean	nucleus	28.48	12.67
Bra017349.1-P	Field mustard	nucleus	27.27	12.57
CDX95998	Canola	nucleus	27.27	12.53
AT1G25550.1	Thale cress	nucleus	26.06	12.5
CDY54503	Canola	nucleus	27.88	12.5
CDX97993	Canola	nucleus	26.06	12.46
GSMUA_Achr4P28210_001	Banana	nucleus	24.24	12.42
CDY39188	Canola	nucleus	26.06	12.36
KRG92028	Soybean	nucleus	28.48	12.34
CDY16075	Canola	nucleus	26.06	12.32
GSMUA_Achr10P...	Banana	nucleus	29.7	12.28
CDX81535	Canola	nucleus	25.45	12.24
GSMUA_Achr9P26570_001	Banana	nucleus	29.09	12.24
Bra038360.1-P	Field mustard	nucleus	27.27	12.23
AT1G13300.1	Thale cress	nucleus	25.45	12.21
CDY38609	Canola	nucleus	26.67	12.19
Bra012471.1-P	Field mustard	nucleus	24.24	12.16
CDY50179	Canola	nucleus	25.45	12.14
KRH75476	Soybean	nucleus	27.88	12.14
GSMUA_Achr3P21090_001	Banana	nucleus	27.27	12.06
AT3G25790.1	Thale cress	nucleus	26.06	12.04
CDY13584	Canola	nucleus	26.06	12.04
KRH34759	Soybean	nucleus	27.88	12.01
Solyc05g009720.2.1	Tomato	nucleus	29.09	12.0
Bra025161.1-P	Field mustard	nucleus	27.27	11.9
CDY21091	Canola	nucleus	24.85	11.85
Bra016734.1-P	Field mustard	nucleus	24.85	11.85
GSMUA_Achr6P05330_001	Banana	nucleus	30.3	11.85
Bra019824.1-P	Field mustard	nucleus	26.06	11.78
GSMUA_Achr6P00650_001	Banana	nucleus	26.67	11.61
GSMUA_Achr4P23210_001	Banana	nucleus	24.85	11.02
GSMUA_Achr4P32500_001	Banana	nucleus	22.42	10.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G13650_001
EnsemblPlants:GSMUA_Achr4P13650_001	EnsemblPlants:GSMUA_Achr4T13650_001	InterPro:Homeobox-like_sf	UniProt:M0SNN0	InterPro:Myb_dom_plants	PANTHER:PTHR31003
PANTHER:PTHR31003:SF16	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00029621B4	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G13650_001]

Coordinates

chr4:-:10187920..10190275

Molecular Weight (calculated)

18107.5 Da

IEP (calculated)

7.543

GRAVY (calculated)

-0.180

Length

165 amino acids

Sequence
(BLAST)

001: MNGSCMHWSS SVAAMVGSQL RFSSSPCVGT YQSVNINCLS AAATPKQIRK LMEVDELTGD EIKSHLQKFR IQSRRTSSMH HSSSNTSSAD FVVVRGIWIP
101: TPEYSSICMA ADEAAAHPGN LTKSAHFLRL LVAVALTGEI QSVRATEEDD LQHRVTVETI NPRWC

Best Arabidopsis Sequence Match ( AT3G25790.1 )
(BLAST)

001: MIKNLSNMKN DNQKREKCCE YIEALEEERR KINVFQRELP LCVELVTQAI EAYKREISGT STDNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEEV
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS

Arabidopsis Description

HHO1Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.