Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400002162 | Potato | nucleus | 87.25 | 92.82 |
VIT_01s0011g03110.t01 | Wine grape | nucleus | 59.5 | 66.85 |
KRH70595 | Soybean | nucleus | 50.0 | 53.91 |
KRG92028 | Soybean | nucleus | 51.0 | 53.54 |
KRH75476 | Soybean | nucleus | 50.5 | 53.3 |
KRH34759 | Soybean | nucleus | 50.75 | 53.0 |
AT1G25550.1 | Thale cress | nucleus | 45.25 | 52.62 |
AT1G68670.1 | Thale cress | nucleus | 46.25 | 52.26 |
CDX95998 | Canola | nucleus | 45.75 | 50.97 |
CDX81535 | Canola | nucleus | 43.5 | 50.73 |
Bra004330.1-P | Field mustard | nucleus | 45.5 | 50.7 |
CDY38609 | Canola | nucleus | 45.75 | 50.69 |
CDY54503 | Canola | nucleus | 45.75 | 49.73 |
Bra038360.1-P | Field mustard | nucleus | 45.75 | 49.73 |
CDX83554 | Canola | nucleus | 43.75 | 49.44 |
CDY13584 | Canola | nucleus | 43.75 | 49.02 |
CDY51129 | Canola | nucleus | 38.75 | 48.44 |
GSMUA_Achr6P09870_001 | Banana | nucleus | 41.0 | 48.24 |
CDY19382 | Canola | nucleus | 41.0 | 48.24 |
CDY20522 | Canola | nucleus | 39.75 | 48.18 |
CDY04180 | Canola | nucleus | 40.25 | 47.77 |
CDY50179 | Canola | nucleus | 41.25 | 47.69 |
GSMUA_Achr10P... | Banana | nucleus | 36.75 | 47.42 |
Bra025161.1-P | Field mustard | nucleus | 44.75 | 47.35 |
AT3G25790.1 | Thale cress | nucleus | 42.25 | 47.34 |
CDX97993 | Canola | nucleus | 40.75 | 47.25 |
CDY39188 | Canola | nucleus | 41.0 | 47.13 |
CDY21091 | Canola | nucleus | 40.75 | 47.11 |
Bra016734.1-P | Field mustard | nucleus | 40.75 | 47.11 |
AT1G13300.1 | Thale cress | nucleus | 40.5 | 47.09 |
CDY16075 | Canola | nucleus | 41.0 | 46.99 |
Bra017349.1-P | Field mustard | nucleus | 41.0 | 45.81 |
GSMUA_Achr11P... | Banana | nucleus | 42.25 | 45.8 |
Bra012471.1-P | Field mustard | nucleus | 37.5 | 45.59 |
Bra019824.1-P | Field mustard | nucleus | 40.75 | 44.66 |
GSMUA_Achr8P18270_001 | Banana | nucleus | 41.0 | 44.2 |
GSMUA_Achr3P21090_001 | Banana | nucleus | 41.0 | 43.97 |
TraesCS2B01G135600.1 | Wheat | nucleus | 37.0 | 42.29 |
Os02t0325600-01 | Rice | nucleus | 43.5 | 42.23 |
TraesCS2D01G119100.1 | Wheat | nucleus | 42.25 | 42.04 |
GSMUA_Achr1P23220_001 | Banana | nucleus | 27.25 | 41.13 |
EES15678 | Sorghum | nucleus | 42.75 | 37.01 |
GSMUA_Achr4P03680_001 | Banana | nucleus | 28.25 | 36.69 |
Zm00001d023411_P001 | Maize | nucleus | 40.75 | 35.98 |
Zm00001d023402_P001 | Maize | nucleus | 41.25 | 35.95 |
TraesCS2A01G116100.2 | Wheat | plastid | 41.5 | 34.95 |
HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 42.5 | 32.88 |
Solyc01g108300.2.1 | Tomato | nucleus | 31.0 | 30.62 |
Solyc02g090400.2.1 | Tomato | nucleus | 28.0 | 30.19 |
Solyc12g006800.1.1 | Tomato | nucleus | 32.0 | 29.16 |
GSMUA_Achr4P13650_001 | Banana | plastid | 12.0 | 29.09 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.2.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0043565 | GO:GO:0045892 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K4BXE6 | InterPro:Myb_dom |
InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF16 | InterPro:SANT/Myb |
SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc05g009720.2 | EnsemblPlants:Solyc05g009720.2.1 | TIGRFAMs:TIGR01557 | UniParc:UPI0002766C5B | SEG:seg |
Description
No Description!
Coordinates
chr5:+:3932222..3934873
Molecular Weight (calculated)
44025.5 Da
IEP (calculated)
7.024
GRAVY (calculated)
-0.971
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSNNNFSDK MERCQQYIDA LEQERTKIQV FSRELPLCLE LVTQAIETYK QQLSGTTTEY NLNAQSTECS DDEHTSSDVP ILEEFIPLKS TFSHEDEDED
101: ENDEENQSHK SKSFNNNNNN STSSKDAKNK KSDWLRSVQL WNQTSDPTPK EELTPKKVSV VEVKKNGSGG AFHPFKKEKN TVAAVETTPA LAGVVLAATG
201: SSTAENSGGS KKEDKDGQRK QRRCWSPELH RRFLHALQQL GGSHVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PSSIHNNNNQ QPPQFVVVGG
301: IWVPPPEYAS MAAGAPAASG EASGVANSNG IYAPIATHPK GPLHDHVSGG TLRQHNNKSS RSERSSERDR SHSHSDCGGV HSNSPATSSS THTTTASPAY
101: ENDEENQSHK SKSFNNNNNN STSSKDAKNK KSDWLRSVQL WNQTSDPTPK EELTPKKVSV VEVKKNGSGG AFHPFKKEKN TVAAVETTPA LAGVVLAATG
201: SSTAENSGGS KKEDKDGQRK QRRCWSPELH RRFLHALQQL GGSHVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PSSIHNNNNQ QPPQFVVVGG
301: IWVPPPEYAS MAAGAPAASG EASGVANSNG IYAPIATHPK GPLHDHVSGG TLRQHNNKSS RSERSSERDR SHSHSDCGGV HSNSPATSSS THTTTASPAY
001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
Arabidopsis Description
HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.