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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 25464976
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400002162 Potato nucleus 87.25 92.82
VIT_01s0011g03110.t01 Wine grape nucleus 59.5 66.85
KRH70595 Soybean nucleus 50.0 53.91
KRG92028 Soybean nucleus 51.0 53.54
KRH75476 Soybean nucleus 50.5 53.3
KRH34759 Soybean nucleus 50.75 53.0
AT1G25550.1 Thale cress nucleus 45.25 52.62
AT1G68670.1 Thale cress nucleus 46.25 52.26
CDX95998 Canola nucleus 45.75 50.97
CDX81535 Canola nucleus 43.5 50.73
Bra004330.1-P Field mustard nucleus 45.5 50.7
CDY38609 Canola nucleus 45.75 50.69
CDY54503 Canola nucleus 45.75 49.73
Bra038360.1-P Field mustard nucleus 45.75 49.73
CDX83554 Canola nucleus 43.75 49.44
CDY13584 Canola nucleus 43.75 49.02
CDY51129 Canola nucleus 38.75 48.44
GSMUA_Achr6P09870_001 Banana nucleus 41.0 48.24
CDY19382 Canola nucleus 41.0 48.24
CDY20522 Canola nucleus 39.75 48.18
CDY04180 Canola nucleus 40.25 47.77
CDY50179 Canola nucleus 41.25 47.69
GSMUA_Achr10P... Banana nucleus 36.75 47.42
Bra025161.1-P Field mustard nucleus 44.75 47.35
AT3G25790.1 Thale cress nucleus 42.25 47.34
CDX97993 Canola nucleus 40.75 47.25
CDY39188 Canola nucleus 41.0 47.13
CDY21091 Canola nucleus 40.75 47.11
Bra016734.1-P Field mustard nucleus 40.75 47.11
AT1G13300.1 Thale cress nucleus 40.5 47.09
CDY16075 Canola nucleus 41.0 46.99
Bra017349.1-P Field mustard nucleus 41.0 45.81
GSMUA_Achr11P... Banana nucleus 42.25 45.8
Bra012471.1-P Field mustard nucleus 37.5 45.59
Bra019824.1-P Field mustard nucleus 40.75 44.66
GSMUA_Achr8P18270_001 Banana nucleus 41.0 44.2
GSMUA_Achr3P21090_001 Banana nucleus 41.0 43.97
TraesCS2B01G135600.1 Wheat nucleus 37.0 42.29
Os02t0325600-01 Rice nucleus 43.5 42.23
TraesCS2D01G119100.1 Wheat nucleus 42.25 42.04
GSMUA_Achr1P23220_001 Banana nucleus 27.25 41.13
EES15678 Sorghum nucleus 42.75 37.01
GSMUA_Achr4P03680_001 Banana nucleus 28.25 36.69
Zm00001d023411_P001 Maize nucleus 40.75 35.98
Zm00001d023402_P001 Maize nucleus 41.25 35.95
TraesCS2A01G116100.2 Wheat plastid 41.5 34.95
HORVU2Hr1G020140.3 Barley nucleus, plastid 42.5 32.88
Solyc01g108300.2.1 Tomato nucleus 31.0 30.62
Solyc02g090400.2.1 Tomato nucleus 28.0 30.19
Solyc12g006800.1.1 Tomato nucleus 32.0 29.16
GSMUA_Achr4P13650_001 Banana plastid 12.0 29.09
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.3ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0043565GO:GO:0045892InterPro:Homeobox-like_sfInterPro:IPR017930UniProt:K4BXE6InterPro:Myb_dom
InterPro:Myb_dom_plantsPFAM:PF00249PFscan:PS51294PANTHER:PTHR31003PANTHER:PTHR31003:SF16InterPro:SANT/Myb
SUPFAM:SSF46689EnsemblPlantsGene:Solyc05g009720.2EnsemblPlants:Solyc05g009720.2.1TIGRFAMs:TIGR01557UniParc:UPI0002766C5BSEG:seg
Description
No Description!
Coordinates
chr5:+:3932222..3934873
Molecular Weight (calculated)
44025.5 Da
IEP (calculated)
7.024
GRAVY (calculated)
-0.971
Length
400 amino acids
Sequence
(BLAST)
001: MMSNNNFSDK MERCQQYIDA LEQERTKIQV FSRELPLCLE LVTQAIETYK QQLSGTTTEY NLNAQSTECS DDEHTSSDVP ILEEFIPLKS TFSHEDEDED
101: ENDEENQSHK SKSFNNNNNN STSSKDAKNK KSDWLRSVQL WNQTSDPTPK EELTPKKVSV VEVKKNGSGG AFHPFKKEKN TVAAVETTPA LAGVVLAATG
201: SSTAENSGGS KKEDKDGQRK QRRCWSPELH RRFLHALQQL GGSHVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PSSIHNNNNQ QPPQFVVVGG
301: IWVPPPEYAS MAAGAPAASG EASGVANSNG IYAPIATHPK GPLHDHVSGG TLRQHNNKSS RSERSSERDR SHSHSDCGGV HSNSPATSSS THTTTASPAY
Best Arabidopsis Sequence Match ( AT1G68670.1 )
(BLAST)
001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
Arabidopsis Description
HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.