Factsheet for TraesCS2D01G119100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G015100.1
TraesCS1B01G019300.1
TraesCS2B01G194500.1
TraesCS2D01G175800.1
TraesCS3A01G421900.1
TraesCS3B01G457100.1
TraesCS3D01G417000.1
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5A01G174800.1
TraesCS5B01G115400.1
TraesCS5B01G174000.1
TraesCS5D01G122800.1
TraesCS5D01G181000.1
TraesCS7B01G036400.1
TraesCS7D01G134800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT1G25550.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT1G25550.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT1G25550.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT1G25550.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT1G25550.1	TraesCS5D01G122800.1	AT1G35670.1	19130088
AT1G68670.1	TraesCS1A01G015100.1	AT1G22630.1	21798944
AT1G68670.1	TraesCS1B01G019300.1	AT1G22630.1	21798944
AT1G68670.1	TraesCS2B01G194500.1	AT2G04630.1	21798944
AT1G68670.1	TraesCS2D01G175800.1	AT2G04630.1	21798944
AT1G68670.1	TraesCS3A01G421900.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS3B01G457100.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS3D01G417000.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS7B01G036400.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS7D01G134800.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS5A01G174800.1	AT3G52155.1	21798944
AT1G68670.1	TraesCS5B01G174000.1	AT3G52155.1	21798944
AT1G68670.1	TraesCS5D01G181000.1	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G135600.1	Wheat	nucleus	80.85	92.86
TraesCS2A01G116100.2	Wheat	plastid	92.04	77.89
HORVU2Hr1G020140.3	Barley	nucleus, plastid	91.54	71.18
Os02t0325600-01	Rice	nucleus	69.4	67.72
EES15678	Sorghum	nucleus	63.93	55.63
Zm00001d023411_P001	Maize	nucleus	61.69	54.75
Zm00001d023402_P001	Maize	nucleus	62.44	54.68
GSMUA_Achr11P...	Banana	nucleus	44.53	48.51
GSMUA_Achr3P21090_001	Banana	nucleus	44.03	47.45
GSMUA_Achr6P09870_001	Banana	nucleus	40.05	47.35
GSMUA_Achr8P18270_001	Banana	nucleus	43.53	47.17
VIT_01s0011g03110.t01	Wine grape	nucleus	41.54	46.91
GSMUA_Achr10P...	Banana	nucleus	35.32	45.81
PGSC0003DMT400002162	Potato	nucleus	42.29	45.21
AT1G25550.1	Thale cress	nucleus	36.82	43.02
Solyc05g009720.2.1	Tomato	nucleus	42.04	42.25
AT1G68670.1	Thale cress	nucleus	36.82	41.81
CDY51129	Canola	nucleus	32.59	40.94
CDX81535	Canola	nucleus	34.58	40.52
CDX95998	Canola	nucleus	36.07	40.39
Bra004330.1-P	Field mustard	nucleus	35.82	40.11
CDY20522	Canola	nucleus	32.84	40.0
CDY04180	Canola	nucleus	33.08	39.47
CDX83554	Canola	nucleus	34.58	39.27
CDY38609	Canola	nucleus	35.07	39.06
KRH75476	Soybean	nucleus	36.82	39.05
CDY13584	Canola	nucleus	34.58	38.94
CDY54503	Canola	nucleus	35.57	38.86
KRG92028	Soybean	nucleus	36.82	38.85
AT1G13300.1	Thale cress	nucleus	33.08	38.66
KRH34759	Soybean	nucleus	36.82	38.64
Bra038360.1-P	Field mustard	nucleus	35.32	38.59
KRH70595	Soybean	nucleus	35.32	38.27
CDY39188	Canola	nucleus	33.08	38.22
CDY16075	Canola	nucleus	33.08	38.11
Bra025161.1-P	Field mustard	nucleus	35.82	38.1
Bra017349.1-P	Field mustard	nucleus	33.33	37.43
Bra012471.1-P	Field mustard	nucleus	30.6	37.39
CDY19382	Canola	nucleus	31.59	37.35
CDY50179	Canola	nucleus	32.09	37.28
Bra016734.1-P	Field mustard	nucleus	32.09	37.28
CDY21091	Canola	nucleus	32.09	37.28
AT3G25790.1	Thale cress	nucleus	32.59	36.69
CDX97993	Canola	nucleus	31.34	36.52
Bra019824.1-P	Field mustard	nucleus	30.85	33.97
TraesCS2D01G259200.2	Wheat	nucleus	24.38	27.53
TraesCS3D01G125300.1	Wheat	nucleus	32.09	27.33
TraesCS5D01G081000.1	Wheat	nucleus	24.13	25.87
TraesCS5D01G411800.1	Wheat	plastid	23.88	24.37

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0045892
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	EnsemblPlantsGene:TraesCS2D01G119100
EnsemblPlants:TraesCS2D01G119100.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:68732244..68734075

Molecular Weight (calculated)

43163.9 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.743

Length

402 amino acids

Sequence
(BLAST)

001: MEVPPAQADC DGARRRLQDY LLALEEERRK IHVFQRELPL CLDLVTQTIE GMKSQMGGAA SEETVSDHGG PVLEEFIPLK PSLSLSSSDD ETSNHHAAAP
101: VSNAKAETPP PTPETKKAMP DWLQSAQLST WSEPQQSSSL QKELYQVLPC RPVALNATRT GGAFHPFEKE KQPEPELPAS STTAPASSAL VGDSGDKATS
201: DTEVHDKDSK DVTEKDTDKD KEGHSQPNRK PRRCWAPELH RRFLQALQQL GGSHVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTSRRP SSTAQSGATA
301: ATQPAPQFFV VGSCIWVPQQ EYAAAAAAAA AAADATNVAP GSANQVYART ATLPSGLKPH LEKQSSRQSE GPRSGDTGGV NSDTDNPAMS SSSSQTTSAG
401: HP

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.