Factsheet for GSMUA_Achr3P21090_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr3P18200_001
GSMUA_Achr4P27190_001
GSMUA_Achr5P04520_001
GSMUA_Achr6P25560_001
GSMUA_Achr8P29370_001
GSMUA_Achr9P08680_001
GSMUA_Achr9P13230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT1G68670.1	GSMUA_Achr8P29370_001	AT1G22630.1	21798944
AT1G68670.1	GSMUA_Achr3P18200_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr4P27190_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr5P04520_001	AT3G05530.1	21798944
AT1G68670.1	GSMUA_Achr9P13230_001	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18270_001	Banana	nucleus	67.02	67.39
GSMUA_Achr6P09870_001	Banana	nucleus	57.1	62.65
GSMUA_Achr10P...	Banana	nucleus	46.92	56.45
GSMUA_Achr11P...	Banana	nucleus	55.23	55.83
VIT_01s0011g03110.t01	Wine grape	nucleus	47.99	50.28
Os02t0325600-01	Rice	nucleus	49.33	44.66
AT1G68670.1	Thale cress	nucleus	42.09	44.35
TraesCS2D01G119100.1	Wheat	nucleus	47.45	44.03
CDX81535	Canola	nucleus	40.48	44.02
PGSC0003DMT400002162	Potato	nucleus	44.24	43.88
Bra038360.1-P	Field mustard	nucleus	42.9	43.48
TraesCS2B01G135600.1	Wheat	nucleus	40.75	43.43
AT1G25550.1	Thale cress	nucleus	39.95	43.31
CDY54503	Canola	nucleus	42.09	42.66
KRH75476	Soybean	nucleus	42.63	41.95
KRH34759	Soybean	nucleus	42.63	41.51
Bra004330.1-P	Field mustard	nucleus	39.95	41.5
KRG92028	Soybean	nucleus	42.36	41.47
CDY38609	Canola	nucleus	39.95	41.27
KRH70595	Soybean	nucleus	41.02	41.24
CDX95998	Canola	nucleus	39.68	41.23
Solyc05g009720.2.1	Tomato	nucleus	43.97	41.0
GSMUA_Achr1P23220_001	Banana	nucleus	28.69	40.38
CDY51129	Canola	nucleus	34.32	40.0
CDY20522	Canola	nucleus	35.12	39.7
EES15678	Sorghum	nucleus	48.53	39.18
CDX83554	Canola	nucleus	36.19	38.14
CDY13584	Canola	nucleus	36.46	38.1
AT1G13300.1	Thale cress	nucleus	35.12	38.08
CDY19382	Canola	nucleus	34.32	37.65
Zm00001d023402_P001	Maize	nucleus	46.11	37.47
Zm00001d023411_P001	Maize	nucleus	45.31	37.31
Bra025161.1-P	Field mustard	nucleus	37.8	37.3
CDY21091	Canola	nucleus	34.58	37.28
CDY50179	Canola	nucleus	34.58	37.28
Bra016734.1-P	Field mustard	nucleus	34.58	37.28
CDY16075	Canola	nucleus	34.85	37.25
Bra012471.1-P	Field mustard	nucleus	32.44	36.78
AT3G25790.1	Thale cress	nucleus	35.12	36.69
CDX97993	Canola	nucleus	33.78	36.52
TraesCS2A01G116100.2	Wheat	plastid	46.38	36.42
Bra019824.1-P	Field mustard	nucleus	35.12	35.89
CDY39188	Canola	nucleus	32.98	35.34
CDY04180	Canola	nucleus	31.9	35.31
Bra017349.1-P	Field mustard	nucleus	33.24	34.64
HORVU2Hr1G020140.3	Barley	nucleus, plastid	47.72	34.43
GSMUA_Achr4P03680_001	Banana	nucleus	28.15	34.09
GSMUA_Achr6P05330_001	Banana	nucleus	34.58	30.57
GSMUA_Achr10P...	Banana	nucleus	32.44	30.33
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	26.54	29.64
GSMUA_Achr7P00660_001	Banana	nucleus	26.81	29.5
GSMUA_Achr9P26570_001	Banana	nucleus	30.03	28.57
GSMUA_Achr4P28210_001	Banana	nucleus	24.66	28.57
GSMUA_Achr10P...	Banana	nucleus	29.22	28.09
GSMUA_Achr4P23210_001	Banana	nucleus	27.35	27.42
GSMUA_Achr4P13650_001	Banana	plastid	12.06	27.27
GSMUA_Achr6P34680_001	Banana	nucleus	27.61	27.18
GSMUA_Achr4P32500_001	Banana	nucleus	24.4	26.76
GSMUA_Achr10P...	Banana	nucleus	27.88	26.6
GSMUA_Achr2P13380_001	Banana	nucleus	26.01	26.5
GSMUA_Achr6P00650_001	Banana	nucleus	25.74	25.33

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr3G21090_001	EnsemblPlants:GSMUA_Achr3P21090_001	EnsemblPlants:GSMUA_Achr3T21090_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0SGH5
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296441B	SEG:seg	:

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G21090_001]

Coordinates

chr3:+:22121532..22123604

Molecular Weight (calculated)

40332.2 Da

IEP (calculated)

8.669

GRAVY (calculated)

-0.689

Length

373 amino acids

Sequence
(BLAST)

001: MDLLDRVQSC HDYIRALEEE RKKIEVFQRE LPLCLKLVTH AIESVRQQMS DGERVSNGPV LEEFIPLKPS FKSPSSGAVA AAIGSDRKPD WLRSVQLWNQ
101: EPDTSLKEPP KKPIAVSAKR IGGAFQPFER EKLVVPPPAS RAVAASSTNS AGGRGEGGGC GDSDGSSSGG EKEEKEKEGQ FQSHRKTRRC WSPDLHRRFL
201: NALQQLGGSH AATPKQIRDL MKVDGLTNDE IKSHLQKYRL HTRRPSPAVQ SSSHPAPQFV LLVPPPDYAA AAAVAAAAQP GNGACAPTNG IYAPVASLPS
301: DPRFQQQLQT KKQYQRSCSG GEDSTGGDDD DATNTESLAT SASSQTTTAS PPCKLRSGTD SVEQVLSRSR FRI

Best Arabidopsis Sequence Match ( AT1G68670.1 )
(BLAST)

001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS

Arabidopsis Description

HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.