CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74142
CDX90616
CDX91686
CDY05176
CDY18782
CDY18801
CDY27761
CDY29066
CDY30291
CDY30836
CDY40714
CDY41474

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68670.1	CDX91686	AT1G22630.1	21798944
AT1G68670.1	CDY41474	AT1G22630.1	21798944
AT1G68670.1	CDY30291	AT2G04630.1	21798944
AT1G68670.1	CDY30836	AT2G04630.1	21798944
AT1G68670.1	CDX74142	AT3G05530.1	21798944
AT1G68670.1	CDY05176	AT3G05530.1	21798944
AT1G68670.1	CDY18782	AT3G05530.1	21798944
AT1G68670.1	CDY18801	AT3G05530.1	21798944
AT1G68670.1	CDY27761	AT3G05530.1	21798944
AT1G68670.1	CDY40714	AT3G05530.1	21798944
AT1G68670.1	CDX90616	AT3G52155.1	21798944
AT1G68670.1	CDY29066	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038360.1-P	Field mustard	nucleus	96.79	90.22
CDY54503	Canola	nucleus	96.21	89.67
CDX95998	Canola	nucleus	76.38	72.98
AT1G68670.1	Thale cress	nucleus	75.22	72.88
CDY38609	Canola	nucleus	75.8	72.02
CDY51129	Canola	nucleus	51.02	54.69
CDY20522	Canola	nucleus	50.73	52.73
VIT_01s0011g03110.t01	Wine grape	nucleus	54.52	52.53
CDY50179	Canola	nucleus	46.06	45.66
CDY19382	Canola	nucleus	45.19	45.59
PGSC0003DMT400002162	Potato	nucleus	49.85	45.48
CDX83554	Canola	nucleus	46.65	45.2
CDY21091	Canola	nucleus	45.48	45.09
CDY16075	Canola	nucleus	45.19	44.41
CDY04180	Canola	nucleus	43.15	43.92
CDX97993	Canola	nucleus	44.02	43.77
CDY13584	Canola	nucleus	45.48	43.7
GSMUA_Achr10P...	Banana	nucleus	39.36	43.55
Solyc05g009720.2.1	Tomato	nucleus	50.73	43.5
KRH70595	Soybean	nucleus	46.94	43.4
CDY39188	Canola	nucleus	44.02	43.39
KRH75476	Soybean	nucleus	47.81	43.27
GSMUA_Achr6P09870_001	Banana	nucleus	41.69	42.06
KRH34759	Soybean	nucleus	46.36	41.51
KRG92028	Soybean	nucleus	46.06	41.47
GSMUA_Achr3P21090_001	Banana	nucleus	44.02	40.48
GSMUA_Achr8P18270_001	Banana	nucleus	43.44	40.16
GSMUA_Achr11P...	Banana	nucleus	43.15	40.11
GSMUA_Achr1P23220_001	Banana	nucleus	29.45	38.11
Os02t0325600-01	Rice	nucleus	43.73	36.41
TraesCS2D01G119100.1	Wheat	nucleus	40.52	34.58
CDY59732	Canola	nucleus	24.78	33.2
TraesCS2B01G135600.1	Wheat	nucleus	33.82	33.14
CDY40421	Canola	nucleus	15.74	33.13
GSMUA_Achr4P03680_001	Banana	nucleus	29.74	33.12
EES15678	Sorghum	nucleus	41.98	31.17
Zm00001d023411_P001	Maize	nucleus	39.94	30.24
CDY72117	Canola	nucleus	16.04	30.05
Zm00001d023402_P001	Maize	nucleus	39.65	29.63
CDX69259	Canola	nucleus	27.7	29.5
CDY44057	Canola	nucleus	27.41	29.28
CDY42715	Canola	nucleus	25.07	29.25
TraesCS2A01G116100.2	Wheat	plastid	39.94	28.84
CDY51048	Canola	nucleus	24.78	28.24
CDX75610	Canola	nucleus	26.53	28.0
HORVU2Hr1G020140.3	Barley	nucleus, plastid	41.4	27.47
CDY71327	Canola	nucleus	25.95	26.65
GSMUA_Achr4P13650_001	Banana	plastid	12.24	25.45
CDY70722	Canola	nucleus	22.16	24.76
CDY02988	Canola	nucleus	30.32	24.59
CDY71874	Canola	nucleus	25.66	24.38
CDY51214	Canola	nucleus	30.03	24.35
CDX69206	Canola	nucleus	10.2	22.44
CDY22459	Canola	nucleus	26.24	22.11
CDY29342	Canola	cytosol, mitochondrion, nucleus	11.08	18.81

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078CXK6	EnsemblPlants:CDX81535	ProteinID:CDX81535	ProteinID:CDX81535.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00135220001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF4	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EF0082
SEG:seg	:	:	:	:	:

Description

BnaC02g18390D

Coordinates

chrLK031825:+:1188964..1190586

Molecular Weight (calculated)

37577.0 Da

IEP (calculated)

8.677

GRAVY (calculated)

-0.848

Length

343 amino acids

Sequence
(BLAST)

001: MENDYAQKMQ RCHEYVEALE EEQKKIQVFQ RELPLCLELV TQAIEACRKE LSSTSTTSEQ CSEQTTSVSG GPVLEEFIPT KKIEENGEHE SPTPEEIGNN
101: VDKKKSDWLR SVQLWNPSPD TNEVSNPERV VGKKAKVKKR PAAVKAVASA PAVKVVASAP ATTTSSTTET CGVGKGGEEH LHQQQSQSQT RRKQRRCWSP
201: ELHRRFLHAL QQLGGSHVAT PKQIRDHMKV DGLTNDEVKS HLQKYRLHTR RPATTVTAQG NGNSQQPQFM VVGGIWVPSP QDVPPPSDVA NNGGGAYAPL
301: TLQPPPQPLP PQSPKRSVER SSGRCNSQAA SSSTNTTTSS PVS

Best Arabidopsis Sequence Match ( AT1G68670.1 )
(BLAST)

001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS

Arabidopsis Description

HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.