CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025161.1-P	Field mustard	nucleus	96.36	91.01
CDX83554	Canola	nucleus	88.24	88.98
CDY39188	Canola	nucleus	78.71	80.75
CDY04180	Canola	nucleus	72.27	76.56
AT3G25790.1	Thale cress	nucleus	76.19	76.19
CDY50179	Canola	nucleus	60.22	62.14
CDY21091	Canola	nucleus	59.1	60.98
CDX97993	Canola	nucleus	58.82	60.87
CDY19382	Canola	nucleus	57.7	60.59
CDY16075	Canola	nucleus	58.82	60.17
VIT_01s0011g03110.t01	Wine grape	nucleus	47.62	47.75
PGSC0003DMT400002162	Potato	nucleus	48.46	46.01
CDX81535	Canola	nucleus	43.7	45.48
CDY51129	Canola	nucleus	40.34	45.0
CDY20522	Canola	nucleus	41.46	44.85
CDX95998	Canola	nucleus	44.82	44.57
CDY54503	Canola	nucleus	45.94	44.57
CDY38609	Canola	nucleus	44.54	44.04
Solyc05g009720.2.1	Tomato	nucleus	49.02	43.75
GSMUA_Achr11P...	Banana	nucleus	40.34	39.02
GSMUA_Achr10P...	Banana	nucleus	32.77	37.74
GSMUA_Achr6P09870_001	Banana	nucleus	35.57	37.35
GSMUA_Achr8P18270_001	Banana	nucleus	38.38	36.93
GSMUA_Achr3P21090_001	Banana	nucleus	38.1	36.46
GSMUA_Achr1P23220_001	Banana	nucleus	26.89	36.23
CDY59732	Canola	nucleus	25.49	35.55
Os02t0325600-01	Rice	nucleus	40.06	34.71
TraesCS2D01G119100.1	Wheat	nucleus	38.94	34.58
TraesCS2B01G135600.1	Wheat	nucleus	31.93	32.57
GSMUA_Achr4P03680_001	Banana	nucleus	27.73	32.14
CDY40421	Canola	nucleus	14.29	31.29
CDY42715	Canola	nucleus	24.65	29.93
EES15678	Sorghum	nucleus	38.66	29.87
CDX75610	Canola	nucleus	27.17	29.85
CDX69259	Canola	nucleus	26.89	29.81
TraesCS2A01G116100.2	Wheat	plastid	38.66	29.05
CDY44057	Canola	nucleus	26.05	28.97
CDY72117	Canola	nucleus	14.85	28.96
Zm00001d023402_P001	Maize	nucleus	36.69	28.54
Zm00001d023411_P001	Maize	nucleus	36.13	28.48
CDY51048	Canola	nucleus	23.81	28.24
CDY71327	Canola	nucleus	25.49	27.25
HORVU2Hr1G020140.3	Barley	nucleus, plastid	38.94	26.89
GSMUA_Achr4P13650_001	Banana	plastid	12.04	26.06
CDY70722	Canola	nucleus	21.57	25.08
CDY51214	Canola	nucleus	29.69	25.06
CDY02988	Canola	nucleus	29.69	25.06
CDY71874	Canola	nucleus	24.37	24.1
CDX69206	Canola	nucleus	10.36	23.72
CDY29342	Canola	cytosol, mitochondrion, nucleus	12.89	22.77
CDY22459	Canola	nucleus	25.77	22.6

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078FKZ3	UniProt:A0A078FKZ3	EnsemblPlants:CDY13584	ProteinID:CDY13584
ProteinID:CDY13584.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00077987001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EDFE87
SEG:seg	:	:	:	:	:

Description

BnaA06g33390DBnaA06g33390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKZ3]

Coordinates

chrLK032037:+:80860..84059

Molecular Weight (calculated)

40167.8 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.964

Length

357 amino acids

Sequence
(BLAST)

001: MIKSLSNMKN YNEKREKCCE YIEALEEERR KINVFQRELP LCLELVTQAI EAYKKEISGT TTDTLYGQPE CSEQTTGECG PVLDLFLPIK QSSASTDEEE
101: EEEEVDEDDD VEHESHDTGI DFVDKNMKSE WLKSVQLWNQ PEAVPVSKWE RSQQETQTLV EPIKENDNGA GGSARQKTEA ERGGSGGSGG SSSRRGQRKQ
201: RRCWSHELHR RFLNALKQLG GPHVATPKQI RELMKVDGLT NDEVKSHLQK YRLHTRRPSQ TVPNNRDSQT QHFVVVGGIW VPQASHSKAN AVASRETTTG
301: IYGPMASPLP SEWPSHSSFG REISEERSRC SNKGIVRCSS PAMSSSTRTK TKDAKMS

Best Arabidopsis Sequence Match ( AT3G25790.1 )
(BLAST)

001: MIKNLSNMKN DNQKREKCCE YIEALEEERR KINVFQRELP LCVELVTQAI EAYKREISGT STDNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEEV
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS

Arabidopsis Description

HHO1Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.