Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G25550.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT1G25550.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012471.1-P | Field mustard | nucleus | 95.31 | 92.71 |
| CDY20522 | Canola | nucleus | 94.69 | 91.82 |
| AT1G25550.1 | Thale cress | nucleus | 71.25 | 66.28 |
| CDX81535 | Canola | nucleus | 54.69 | 51.02 |
| CDY54503 | Canola | nucleus | 56.88 | 49.46 |
| CDY38609 | Canola | nucleus | 54.38 | 48.2 |
| CDX95998 | Canola | nucleus | 53.44 | 47.63 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 50.94 | 45.79 |
| CDY50179 | Canola | nucleus | 46.88 | 43.35 |
| CDY21091 | Canola | nucleus | 46.56 | 43.06 |
| CDY04180 | Canola | nucleus | 45.0 | 42.73 |
| CDY39188 | Canola | nucleus | 45.0 | 41.38 |
| CDY19382 | Canola | nucleus | 43.75 | 41.18 |
| CDY16075 | Canola | nucleus | 44.38 | 40.69 |
| CDX83554 | Canola | nucleus | 45.0 | 40.68 |
| CDX97993 | Canola | nucleus | 43.75 | 40.58 |
| CDY13584 | Canola | nucleus | 45.0 | 40.34 |
| GSMUA_Achr10P... | Banana | nucleus | 38.75 | 40.0 |
| PGSC0003DMT400002162 | Potato | nucleus | 45.94 | 39.1 |
| KRH70595 | Soybean | nucleus | 45.0 | 38.81 |
| Solyc05g009720.2.1 | Tomato | nucleus | 48.44 | 38.75 |
| KRG92028 | Soybean | nucleus | 45.94 | 38.58 |
| KRH75476 | Soybean | nucleus | 45.31 | 38.26 |
| KRH34759 | Soybean | nucleus | 45.62 | 38.12 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 40.0 | 37.65 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 43.44 | 37.47 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 29.69 | 35.85 |
| GSMUA_Achr11P... | Banana | nucleus | 41.25 | 35.77 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 40.0 | 34.32 |
| Os02t0325600-01 | Rice | nucleus | 44.06 | 34.22 |
| CDY40421 | Canola | nucleus | 16.88 | 33.13 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 40.94 | 32.59 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 30.94 | 32.14 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 34.69 | 31.71 |
| Zm00001d023411_P001 | Maize | nucleus | 43.44 | 30.68 |
| CDY44057 | Canola | nucleus | 30.31 | 30.22 |
| CDX69259 | Canola | nucleus | 30.31 | 30.12 |
| EES15678 | Sorghum | nucleus | 43.44 | 30.09 |
| CDY72117 | Canola | nucleus | 17.19 | 30.05 |
| Zm00001d023402_P001 | Maize | nucleus | 42.81 | 29.85 |
| CDY59732 | Canola | nucleus | 23.75 | 29.69 |
| CDY42715 | Canola | nucleus | 26.56 | 28.91 |
| CDX75610 | Canola | nucleus | 29.06 | 28.62 |
| TraesCS2A01G116100.2 | Wheat | plastid | 41.88 | 28.21 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 41.25 | 25.53 |
| CDY51048 | Canola | nucleus | 23.75 | 25.25 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.81 | 24.85 |
| CDY70722 | Canola | nucleus | 23.44 | 24.43 |
| CDY71327 | Canola | nucleus | 24.69 | 23.65 |
| CDY51214 | Canola | nucleus | 30.94 | 23.4 |
| CDY02988 | Canola | nucleus | 30.94 | 23.4 |
| CDY71874 | Canola | nucleus | 26.25 | 23.27 |
| CDX69206 | Canola | nucleus | 11.25 | 23.08 |
| CDY22459 | Canola | nucleus | 27.5 | 21.62 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 10.31 | 16.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078IP17 | UniProt:A0A078IP17 | EnsemblPlants:CDY51129 | ProteinID:CDY51129 |
| ProteinID:CDY51129.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00098301001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF4 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EEA95D | SEG:seg |
Description
BnaA07g37120DBnaA07g37120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IP17]
Coordinates
chrLK032968:-:66158..67732
Molecular Weight (calculated)
36415.1 Da
IEP (calculated)
8.264
GRAVY (calculated)
-0.901
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKGDNMDY TLKKKRCEDY IEALVEEQQK IQVFKRDLPL CLSLVTQAIE SYRKELSEFS RSEHIQPEGS ERTTSECEGR DGCIALCEEF VPIKSCERVK
101: DDEAENNIDK KKSEWLQLWN QSPDPQSIED QTTNCDAFQP FQKGKLAYSQ PLKAITPTPT ASSSTAETGG NKKEMEQQKQ LQMHRKQRRC WSSELHRRFL
201: HALQKLGGSH VATPKQIRDL MQVDGLTNDE VKSHLQKYRL HTRRPATPTL TNGCENPQQQ QLIVVEGIWV PSKDAVNNRV YAPVAVQPPP RSSPSEPRSI
301: QRCKPPTASS STHPLHLPLS
101: DDEAENNIDK KKSEWLQLWN QSPDPQSIED QTTNCDAFQP FQKGKLAYSQ PLKAITPTPT ASSSTAETGG NKKEMEQQKQ LQMHRKQRRC WSSELHRRFL
201: HALQKLGGSH VATPKQIRDL MQVDGLTNDE VKSHLQKYRL HTRRPATPTL TNGCENPQQQ QLIVVEGIWV PSKDAVNNRV YAPVAVQPPP RSSPSEPRSI
301: QRCKPPTASS STHPLHLPLS
001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS
Arabidopsis Description
HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.