Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44057 | Canola | nucleus | 69.53 | 88.16 |
| CDX75610 | Canola | nucleus | 55.77 | 69.85 |
| CDX69259 | Canola | nucleus | 55.04 | 69.57 |
| CDY42715 | Canola | nucleus | 48.16 | 66.67 |
| CDY72117 | Canola | nucleus | 27.27 | 60.66 |
| CDY40421 | Canola | nucleus | 23.34 | 58.28 |
| CDX69206 | Canola | nucleus | 19.16 | 50.0 |
| KRH28514 | Soybean | nucleus | 28.75 | 34.21 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 32.19 | 33.94 |
| Solyc02g090400.2.1 | Tomato | nucleus | 30.22 | 33.15 |
| PGSC0003DMT400026096 | Potato | nucleus | 29.48 | 32.88 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 27.27 | 32.74 |
| KRH76947 | Soybean | nucleus | 29.24 | 32.43 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 26.04 | 31.74 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 26.04 | 31.74 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 25.55 | 31.14 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 24.57 | 31.06 |
| KRH04674 | Soybean | nucleus | 27.76 | 30.96 |
| CDY51048 | Canola | nucleus | 22.6 | 30.56 |
| Zm00001d034160_P001 | Maize | nucleus | 25.31 | 30.47 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 28.26 | 30.34 |
| KXG37487 | Sorghum | nucleus | 25.31 | 30.12 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 28.5 | 29.59 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 27.03 | 29.57 |
| CDY59732 | Canola | nucleus | 18.43 | 29.3 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 24.57 | 28.99 |
| GSMUA_Achr10P... | Banana | nucleus | 27.76 | 28.9 |
| Os03t0764600-01 | Rice | nucleus | 24.57 | 28.74 |
| GSMUA_Achr10P... | Banana | nucleus | 27.27 | 28.61 |
| CDY20522 | Canola | nucleus | 23.1 | 28.48 |
| Os07t0119300-01 | Rice | nucleus | 24.82 | 28.45 |
| CDY71327 | Canola | nucleus | 23.1 | 28.14 |
| Zm00001d013202_P001 | Maize | nucleus | 24.82 | 27.9 |
| CDY51129 | Canola | nucleus | 21.62 | 27.5 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 23.83 | 27.32 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 24.57 | 27.32 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 25.06 | 27.2 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 22.6 | 27.06 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 25.06 | 27.06 |
| CDX95998 | Canola | nucleus | 23.59 | 26.74 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 24.82 | 26.72 |
| CDY04180 | Canola | nucleus | 22.11 | 26.71 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 23.34 | 26.69 |
| CDX97993 | Canola | nucleus | 22.6 | 26.67 |
| TraesCS5D01G411800.1 | Wheat | plastid | 25.8 | 26.65 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 24.82 | 26.65 |
| CDY16075 | Canola | nucleus | 22.85 | 26.65 |
| CDY19382 | Canola | nucleus | 22.11 | 26.47 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 24.57 | 26.45 |
| CDY50179 | Canola | nucleus | 22.36 | 26.3 |
| CDX81535 | Canola | nucleus | 22.11 | 26.24 |
| CDY38609 | Canola | nucleus | 23.1 | 26.04 |
| Zm00001d018698_P001 | Maize | nucleus | 23.59 | 26.02 |
| CDY21091 | Canola | nucleus | 22.11 | 26.01 |
| CDX83554 | Canola | nucleus | 22.6 | 25.99 |
| CDY54503 | Canola | nucleus | 23.34 | 25.82 |
| CDY13584 | Canola | nucleus | 22.6 | 25.77 |
| EER95793 | Sorghum | nucleus | 24.57 | 25.45 |
| Zm00001d030891_P001 | Maize | nucleus | 22.6 | 25.14 |
| CDY39188 | Canola | nucleus | 21.38 | 25.0 |
| Os12t0586300-00 | Rice | extracellular | 23.59 | 24.3 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 23.83 | 24.13 |
| Os03t0241001-00 | Rice | plastid | 8.35 | 23.61 |
| CDY02988 | Canola | nucleus | 24.32 | 23.4 |
| CDY51214 | Canola | nucleus | 24.32 | 23.4 |
| OQU79454 | Sorghum | nucleus | 22.85 | 22.85 |
| HORVU2Hr1G006350.1 | Barley | plastid | 7.37 | 22.39 |
| CDY70722 | Canola | nucleus | 16.71 | 22.15 |
| HORVU2Hr1G062670.3 | Barley | plastid | 23.34 | 21.94 |
| HORVU6Hr1G034270.1 | Barley | plastid | 7.13 | 21.64 |
| CDY71874 | Canola | nucleus | 18.18 | 20.5 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 21.62 | 19.3 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 9.09 | 18.32 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 0.74 | 4.76 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078GAQ5 | UniProt:A0A078GAQ5 | EnsemblPlants:CDY22459 | ProteinID:CDY22459 |
| ProteinID:CDY22459.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00019007001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF2 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE00E4 | SEG:seg |
Description
BnaC03g61720DBnaC03g61720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAQ5]
Coordinates
chrLK032131:+:570010..572255
Molecular Weight (calculated)
45610.7 Da
IEP (calculated)
9.201
GRAVY (calculated)
-0.761
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQTDKDRRM SLNLNLSMYS IAKPLSQFLD EVSRIKDNHS KLSEIDVYVG KLEEERKKID VFKRELPLCM LLLNEAIERL KEEASSVMMA SNGKLDVGQG
101: SKLENDNKKN WMSSAQLWIS NSNSTNKEED RRVTQTCNNL NQGGSFTPFN PPMINCSRTE QNHQFNSRTE QNHQFNKPHH IPKKEQRRRW SQDLHRRFVD
201: AFRRIGGSQV ATPKQIRDEM KVDGLTNDEV KSHLQKYRMH IRKHPLSSSD QPRETQSLIS LSRSGSPQSP LVGRGLFNNN GSHISEDDEE EEKSDGRSWR
301: VSVEENRGGG DVVEDDGVSG VDVVIHGPAD GVCAFFGEVI ATPILRRAPA VGVGVVRGYS PRSSLSQARA EVSAMKSSSS GASFLSACGR HAQLHRRVGG
401: QTMAVLT
101: SKLENDNKKN WMSSAQLWIS NSNSTNKEED RRVTQTCNNL NQGGSFTPFN PPMINCSRTE QNHQFNSRTE QNHQFNKPHH IPKKEQRRRW SQDLHRRFVD
201: AFRRIGGSQV ATPKQIRDEM KVDGLTNDEV KSHLQKYRMH IRKHPLSSSD QPRETQSLIS LSRSGSPQSP LVGRGLFNNN GSHISEDDEE EEKSDGRSWR
301: VSVEENRGGG DVVEDDGVSG VDVVIHGPAD GVCAFFGEVI ATPILRRAPA VGVGVVRGYS PRSSLSQARA EVSAMKSSSS GASFLSACGR HAQLHRRVGG
401: QTMAVLT
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
Arabidopsis Description
HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.