Factsheet for HORVU5Hr1G097560.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G406300.2	Wheat	nucleus	59.43	81.14
TraesCS5A01G401600.1	Wheat	nucleus	59.43	81.14
TraesCS5D01G411800.1	Wheat	plastid	62.72	72.59
KXG37487	Sorghum	nucleus	38.38	51.17
Os03t0764600-01	Rice	nucleus	38.82	50.86
Zm00001d034160_P001	Maize	nucleus	37.5	50.59
Zm00001d013202_P001	Maize	nucleus	37.28	46.96
HORVU2Hr1G062670.3	Barley	plastid	35.09	36.95
GSMUA_Achr7P00660_001	Banana	nucleus	24.34	32.74
GSMUA_Achr6P34680_001	Banana	nucleus	26.97	32.45
GSMUA_Achr9P26570_001	Banana	nucleus	27.85	32.4
CDY40421	Canola	nucleus	11.4	31.9
GSMUA_Achr10P...	Banana	nucleus	26.75	31.44
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	23.03	31.44
GSMUA_Achr4P28210_001	Banana	nucleus	22.15	31.37
GSMUA_Achr4P32500_001	Banana	nucleus	23.03	30.88
GSMUA_Achr10P...	Banana	nucleus	26.32	30.69
CDY72117	Canola	nucleus	12.28	30.6
HORVU2Hr1G006350.1	Barley	plastid	8.99	30.6
GSMUA_Achr4P23210_001	Banana	nucleus	24.56	30.11
CDX69259	Canola	nucleus	21.05	29.81
Bra010581.1-P	Field mustard	nucleus	20.39	29.81
Bra018794.1-P	Field mustard	nucleus	19.74	29.8
GSMUA_Achr2P13380_001	Banana	nucleus	23.9	29.78
HORVU5Hr1G018220.2	Barley	nucleus	24.56	29.63
CDY51048	Canola	nucleus	19.52	29.57
GSMUA_Achr6P00650_001	Banana	nucleus	24.56	29.55
HORVU6Hr1G034270.1	Barley	plastid	8.55	29.1
CDY44057	Canola	nucleus	20.39	28.97
Bra011720.1-P	Field mustard	nucleus	20.61	28.92
CDX75610	Canola	nucleus	20.61	28.92
Bra040662.1-P	Field mustard	nucleus	20.39	28.53
CDY71327	Canola	nucleus	20.83	28.44
CDY42715	Canola	nucleus	18.2	28.23
Bra017795.1-P	Field mustard	nucleus	18.2	28.23
KRG89233	Soybean	nucleus	22.59	27.99
VIT_03s0063g01060.t01	Wine grape	nucleus	24.56	27.93
KRH28514	Soybean	nucleus	20.83	27.78
VIT_07s0197g00060.t01	Wine grape	nucleus	23.46	27.72
PGSC0003DMT400066352	Potato	nucleus	24.34	27.61
CDX69206	Canola	nucleus	9.43	27.56
Solyc01g108300.2.1	Tomato	nucleus	24.34	27.41
AT1G49560.1	Thale cress	nucleus	19.96	27.33
KRH49770	Soybean	nucleus	21.71	26.98
CDY59732	Canola	nucleus	15.13	26.95
AT4G37180.2	Thale cress	nucleus	21.05	26.45
Solyc02g090400.2.1	Tomato	nucleus	21.49	26.42
PGSC0003DMT400026096	Potato	nucleus	21.05	26.3
KRH76947	Soybean	nucleus	21.05	26.16
KRH50234	Soybean	nucleus	23.46	25.97
KRH04674	Soybean	nucleus	20.61	25.75
KRH71185	Soybean	nucleus	23.25	25.6
CDY22459	Canola	nucleus	19.3	21.62
HORVU3Hr1G022960.5	Barley	nucleus	20.61	18.04
HORVU2Hr1G020140.3	Barley	nucleus, plastid	19.74	17.41
HORVU4Hr1G032990.1	Barley	cytosol	1.97	14.29
CDY29342	Canola	cytosol, mitochondrion, nucleus	5.26	11.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:A0A287SFK3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G097560	EnsemblPlants:HORVU5Hr1G097560.4	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF6	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000B470A92	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:-:604812957..604815023

Molecular Weight (calculated)

50544.2 Da

IEP (calculated)

11.687

GRAVY (calculated)

-0.759

Length

456 amino acids

Sequence
(BLAST)

001: SLSHTTSQGE RTNPAVQLAD SPRRLYMRAP SRSPTQHPPL LSFSRLASPP LPSHRYQLPS VRPSVAADRE RWRAACVPLL ARVSLHGAGR RRDRDAPRPG
101: PRPQAIRRQD RRPARRRRQG AARRRRLHPR PRGGAPQDRG LPPRAAPLRP PPRRRSATHP FHPNGFSFSF FCLFVCLFRF CLTRAVACAV IEFMKEEAAK
201: RSERRDADDN DKRKWMSTAQ LWVDSRAADP LKEQKKESAL SKPMLLGGAT GAPMAVSCGA MPPPPAPQYF GRDDKIVGAE GLPALPMMSP AANRQFSPPA
301: DDRHQAFAAK FAAAMPPPPS GPGLQAHDQQ SRKTRRCWSP ELHRHFVAAL HQLGGPQVAT PKQIREVMKV DGLTNDEVKS HLQKYRLHNQ RSPSSSSASH
401: PIMLVGDLWA HQEQSSSQSR SPEGPLQLSC SGVAVSALTV SDSSEEDDRS VGYSRR

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.