Factsheet for VIT_07s0197g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g01060.t01	Wine grape	nucleus	53.11	51.12
KRH28514	Soybean	nucleus	44.3	50.0
KRH76947	Soybean	nucleus	44.3	46.59
Bra010581.1-P	Field mustard	nucleus	36.79	45.51
CDY44057	Canola	nucleus	37.31	44.86
CDY42715	Canola	nucleus	32.9	43.2
PGSC0003DMT400026096	Potato	nucleus	40.67	43.01
Solyc02g090400.2.1	Tomato	nucleus	41.19	42.86
CDX69259	Canola	nucleus	35.75	42.86
Bra017795.1-P	Field mustard	nucleus	32.64	42.86
GSMUA_Achr7P00660_001	Banana	nucleus	37.56	42.77
KRH04674	Soybean	nucleus	39.9	42.19
CDX75610	Canola	nucleus	35.49	42.15
Bra011720.1-P	Field mustard	nucleus	34.97	41.54
CDY40421	Canola	nucleus	17.36	41.1
GSMUA_Achr6P34680_001	Banana	nucleus	39.9	40.63
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	34.2	39.52
GSMUA_Achr10P...	Banana	nucleus	39.64	39.13
AT4G37180.2	Thale cress	nucleus	36.53	38.84
GSMUA_Achr4P28210_001	Banana	nucleus	32.12	38.51
GSMUA_Achr10P...	Banana	nucleus	38.6	38.4
GSMUA_Achr2P13380_001	Banana	nucleus	36.27	38.25
TraesCS5A01G401600.1	Wheat	nucleus	32.9	38.02
GSMUA_Achr9P26570_001	Banana	nucleus	38.6	38.01
Zm00001d034160_P001	Maize	nucleus	33.16	37.87
KXG37487	Sorghum	nucleus	33.42	37.72
CDY72117	Canola	nucleus	17.88	37.7
TraesCS5B01G406300.2	Wheat	nucleus	32.12	37.13
GSMUA_Achr4P23210_001	Banana	nucleus	35.49	36.83
Zm00001d007962_P001	Maize	extracellular, nucleus	32.9	36.81
TraesCS2A01G264800.1	Wheat	nucleus	33.42	36.34
TraesCS2D01G259200.2	Wheat	nucleus	33.42	36.24
Os07t0119300-01	Rice	nucleus	33.16	36.06
Os03t0764600-01	Rice	nucleus	32.38	35.92
Zm00001d013202_P001	Maize	nucleus	33.68	35.91
Zm00001d018698_P001	Maize	nucleus	33.94	35.5
Os03t0241001-00	Rice	plastid	13.21	35.42
GSMUA_Achr4P32500_001	Banana	nucleus	30.57	34.71
Zm00001d030891_P001	Maize	nucleus	32.64	34.43
TraesCS5D01G081000.1	Wheat	nucleus	33.42	34.4
TraesCS5A01G068900.2	Wheat	nucleus	33.68	34.39
HORVU2Hr1G006350.1	Barley	plastid	11.92	34.33
HORVU6Hr1G034270.1	Barley	plastid	11.92	34.33
Os12t0586300-00	Rice	extracellular	34.97	34.18
CDX69206	Canola	nucleus	13.73	33.97
HORVU5Hr1G018220.2	Barley	nucleus	33.16	33.86
TraesCS5B01G075300.1	Wheat	nucleus	32.9	33.69
EER95793	Sorghum	nucleus	34.2	33.59
GSMUA_Achr6P00650_001	Banana	nucleus	32.9	33.51
TraesCS2B01G277300.1	Wheat	nucleus	33.94	32.59
VIT_01s0011g03110.t01	Wine grape	nucleus	29.79	32.3
CDY22459	Canola	nucleus	33.94	32.19
TraesCS5D01G411800.1	Wheat	plastid	32.12	31.47
OQU79454	Sorghum	nucleus	32.64	30.96
HORVU2Hr1G062670.3	Barley	plastid	33.42	29.79
VIT_11s0016g04600.t01	Wine grape	nucleus	34.72	29.13
HORVU5Hr1G097560.4	Barley	nucleus, plastid	27.72	23.46
HORVU4Hr1G032990.1	Barley	cytosol	2.59	15.87

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100243049	wikigene:100243049	MapMan:15.5.2.3	EMBL:AM455739	ProteinID:CAN83122
ProteinID:CAN83122.1	ProteinID:CCB48253	ProteinID:CCB48253.1	UniProt:F6H7R1	EMBL:FN595251	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100243049	wikigene:LOC100243049
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF2
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000210925D	ArrayExpress:VIT_07s0197g00060	EnsemblPlantsGene:VIT_07s0197g00060
EnsemblPlants:VIT_07s0197g00060.t01	RefSeq:XP_002264629	RefSeq:XP_002264629.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:14553744..14555824

Molecular Weight (calculated)

42481.9 Da

IEP (calculated)

5.969

GRAVY (calculated)

-0.795

Length

386 amino acids

Sequence
(BLAST)

001: MGSNMAELRL DLNPGCELKT VSSFLREVSM MRDSSEKLSK LDDYVKGLED EMRKIDGFKR ELPLCMLLLN DAILRLREEA MQCTESEGGH VTEEFIPLKG
101: RSEGDEGAEM GKDSSDKRSW MSCAQLWSCN RSSDNNNKKS VLEFQQRNEE DNNSGSENPI RPCSYGNRAG AFVPFKVSSG FPAKGDKEVV PVAGLSLMTP
201: MVEVDPNNSN SKCGNSGETG SGSVSTLLTD SMRLQCKSQQ QPPQQGIRKQ RRCWSPELHR RFVNALQQLG GSQAATPKQI RELMQVEGLT NDEVKSHLQK
301: YRLHVRRIPS TSAAPANGSW VPQVQVGDVS KKNISQSGSP QGPLHLAGSA KGVSGTGGDS MEYDEDDKSE GHSWKDQLHK PGEDDV

Best Arabidopsis Sequence Match ( AT4G37180.1 )
(BLAST)

001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL

Arabidopsis Description

HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.