Factsheet for PGSC0003DMT400026096

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090400.2.1	Tomato	nucleus	91.23	89.76
CDY40421	Canola	nucleus	19.45	43.56
KRH28514	Soybean	nucleus	40.55	43.27
VIT_07s0197g00060.t01	Wine grape	nucleus	43.01	40.67
KRH76947	Soybean	nucleus	40.82	40.6
CDY44057	Canola	nucleus	35.07	39.88
GSMUA_Achr7P00660_001	Banana	nucleus	36.99	39.82
Bra010581.1-P	Field mustard	nucleus	33.97	39.74
CDY72117	Canola	nucleus	19.73	39.34
CDX69259	Canola	nucleus	34.52	39.13
CDX75610	Canola	nucleus	34.79	39.08
CDY42715	Canola	nucleus	31.23	38.78
Bra017795.1-P	Field mustard	nucleus	30.96	38.44
PGSC0003DMT400066352	Potato	nucleus	42.19	38.31
Bra011720.1-P	Field mustard	nucleus	33.97	38.15
GSMUA_Achr4P28210_001	Banana	nucleus	33.42	37.89
GSMUA_Achr10P...	Banana	nucleus	39.45	37.11
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	33.7	36.83
GSMUA_Achr9P26570_001	Banana	nucleus	38.9	36.22
GSMUA_Achr6P34680_001	Banana	nucleus	37.53	36.15
GSMUA_Achr2P13380_001	Banana	nucleus	35.89	35.79
GSMUA_Achr4P23210_001	Banana	nucleus	36.44	35.75
GSMUA_Achr10P...	Banana	nucleus	37.81	35.29
GSMUA_Achr6P00650_001	Banana	nucleus	36.44	35.09
KRH04674	Soybean	nucleus	35.07	35.07
AT4G37180.2	Thale cress	nucleus	34.79	34.99
Os07t0119300-01	Rice	nucleus	33.97	34.93
Zm00001d034160_P001	Maize	nucleus	32.05	34.62
Zm00001d007962_P001	Maize	extracellular, nucleus	32.33	34.2
TraesCS2A01G264800.1	Wheat	nucleus	33.15	34.08
KXG37487	Sorghum	nucleus	31.78	33.92
TraesCS5D01G081000.1	Wheat	nucleus	34.52	33.6
HORVU5Hr1G018220.2	Barley	nucleus	34.79	33.6
TraesCS5A01G401600.1	Wheat	nucleus	30.68	33.53
TraesCS5B01G406300.2	Wheat	nucleus	30.68	33.53
TraesCS2D01G259200.2	Wheat	nucleus	32.6	33.43
Os03t0241001-00	Rice	plastid	13.15	33.33
TraesCS5A01G068900.2	Wheat	nucleus	34.52	33.33
TraesCS5B01G075300.1	Wheat	nucleus	34.25	33.16
Zm00001d018698_P001	Maize	nucleus	33.15	32.79
GSMUA_Achr4P32500_001	Banana	nucleus	30.14	32.35
Os12t0586300-00	Rice	extracellular	34.79	32.15
Zm00001d013202_P001	Maize	nucleus	31.78	32.04
Os03t0764600-01	Rice	nucleus	30.14	31.61
Zm00001d030891_P001	Maize	nucleus	31.51	31.42
HORVU6Hr1G034270.1	Barley	plastid	11.51	31.34
EER95793	Sorghum	nucleus	33.42	31.04
HORVU2Hr1G006350.1	Barley	plastid	11.23	30.6
TraesCS2B01G277300.1	Wheat	nucleus	33.15	30.1
OQU79454	Sorghum	nucleus	33.42	29.98
CDY22459	Canola	nucleus	32.88	29.48
CDX69206	Canola	nucleus	12.33	28.85
PGSC0003DMT400002162	Potato	nucleus	29.32	28.46
TraesCS5D01G411800.1	Wheat	plastid	30.68	28.43
HORVU2Hr1G062670.3	Barley	plastid	32.6	27.48
PGSC0003DMT400078136	Potato	nucleus	32.88	26.97
HORVU5Hr1G097560.4	Barley	nucleus, plastid	26.3	21.05
HORVU4Hr1G032990.1	Barley	cytosol	2.74	15.87

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102591830	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010629	GO:GO:0044212	GO:GO:0048449	GO:GO:0090701
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1AMN5	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400010067	PGSC:PGSC0003DMG400010067	EnsemblPlants:PGSC0003DMT400026096	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF2
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000295DAF5	RefSeq:XP_006338223.1	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010067]

Coordinates

chr2:-:44350235..44352613

Molecular Weight (calculated)

40695.3 Da

IEP (calculated)

8.890

GRAVY (calculated)

-0.765

Length

365 amino acids

Sequence
(BLAST)

001: MGSNSKEMNI DLNFVYVPKL ISDVLTEVSA MDDISKKLTK LNQFLVPLEE ELRKTEAFKR ELPMCMLLLK DAIERLKAEA LLYKEKDKSP VMEEFIPLKK
101: GNSDESGRVK KSNDLSDKKN WMSSAQLWST PVQYESLKSS GVEEKAREKQ YQLGACKLKN ERGAFLPFQG QALKEGKNGL AVKDLSLSMA VTVGEGEKGQ
201: KPIDVSVKRE NGPSNSNGCG VFSQDKSQHR KQRRCWSPEL HRRFVDALHQ LGGAQVATPK QIRDIMQVDG LTNDEVKSHL QKYRLHVRRV PASGCSWSNM
301: DEIGESSKTN GTQSGSPEGP LHFTGSGSAK GVSINEEEDN KSESYNWNGQ LQKSIEGSTI RSSSH

Best Arabidopsis Sequence Match ( AT4G37180.1 )
(BLAST)

001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL

Arabidopsis Description

HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.