Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G259200.2 | Wheat | nucleus | 97.18 | 96.91 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 96.9 | 85.57 |
| HORVU2Hr1G062670.3 | Barley | plastid | 96.62 | 79.21 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 71.55 | 73.62 |
| Os07t0119300-01 | Rice | nucleus | 72.11 | 72.11 |
| Zm00001d018698_P001 | Maize | nucleus | 71.83 | 69.11 |
| EER95793 | Sorghum | nucleus | 74.37 | 67.18 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 52.11 | 55.39 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 38.87 | 40.71 |
| GSMUA_Achr10P... | Banana | nucleus | 44.23 | 40.15 |
| GSMUA_Achr10P... | Banana | nucleus | 43.66 | 39.95 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 42.25 | 39.58 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 42.54 | 38.52 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 36.62 | 38.24 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 34.65 | 38.2 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 35.77 | 38.02 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 39.72 | 37.9 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 40.0 | 37.47 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 38.03 | 36.89 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 38.87 | 36.51 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 39.72 | 35.16 |
| Bra018794.1-P | Field mustard | nucleus | 29.86 | 35.1 |
| KRH28514 | Soybean | nucleus | 33.8 | 35.09 |
| CDY51048 | Canola | nucleus | 29.58 | 34.88 |
| CDY59732 | Canola | nucleus | 25.07 | 34.77 |
| KRH71185 | Soybean | nucleus | 40.28 | 34.54 |
| KRH50234 | Soybean | nucleus | 40.0 | 34.47 |
| CDY40421 | Canola | nucleus | 15.77 | 34.36 |
| KRG89233 | Soybean | nucleus | 35.49 | 34.24 |
| PGSC0003DMT400066352 | Potato | nucleus | 38.03 | 33.58 |
| Solyc01g108300.2.1 | Tomato | nucleus | 38.31 | 33.58 |
| KRH49770 | Soybean | nucleus | 34.65 | 33.52 |
| Solyc02g090400.2.1 | Tomato | nucleus | 34.93 | 33.42 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 36.34 | 33.42 |
| CDY72117 | Canola | nucleus | 17.18 | 33.33 |
| CDX75610 | Canola | nucleus | 30.42 | 33.23 |
| PGSC0003DMT400026096 | Potato | nucleus | 34.08 | 33.15 |
| Bra040662.1-P | Field mustard | nucleus | 30.14 | 32.82 |
| Bra010581.1-P | Field mustard | nucleus | 28.73 | 32.69 |
| CDY42715 | Canola | nucleus | 27.04 | 32.65 |
| Bra017795.1-P | Field mustard | nucleus | 27.04 | 32.65 |
| CDX69259 | Canola | nucleus | 29.58 | 32.61 |
| KRH76947 | Soybean | nucleus | 33.24 | 32.15 |
| CDY44057 | Canola | nucleus | 29.01 | 32.09 |
| CDY71327 | Canola | nucleus | 30.14 | 32.04 |
| Bra011720.1-P | Field mustard | nucleus | 29.3 | 32.0 |
| AT1G49560.1 | Thale cress | nucleus | 29.58 | 31.53 |
| KRH04674 | Soybean | nucleus | 32.11 | 31.23 |
| CDX69206 | Canola | nucleus | 12.96 | 29.49 |
| AT4G37180.2 | Thale cress | nucleus | 29.3 | 28.65 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 32.39 | 24.36 |
| CDY22459 | Canola | nucleus | 27.32 | 23.83 |
| TraesCS2A01G116100.2 | Wheat | plastid | 28.73 | 21.47 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 11.83 | 20.79 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G264800.1 | EnsemblPlantsGene:TraesCS2A01G264800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF15 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | MapMan:15.5.2.3 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:420225849..420227378
Molecular Weight (calculated)
38098.8 Da
IEP (calculated)
8.097
GRAVY (calculated)
-0.632
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDVGEIGM GADLSLDLKM FAAKSLGRVR EAPAAAMDDC IRRLEEEKSK IEVFRRELPL CARLLADVID VMKKEVEEKK RGGDRGEDKE DAGAGDKSNW
101: MSTAQLWTGD SVRGDDASEK QDARRRSSEP ESHDGAALPF KAVGSGAPAF APPSLRKDDK AVRMPDLPFL SPAPTKTSPA AATGGAEESR RQLVGFAQEA
201: ARAAAALAPA APSLGLQAQS QQTAQQQQQA RKARRCWSPE LHRQFVTALH QLGGPQVATP KQIRELMKVD GLTNDEVKSH LQKYRLHNRR APGSPAANRP
301: IVLMGGLWIT QDQSSSQSGG SPPGPLHFSS SGVAASSVTV SGEEEDGRSE SYGWK
101: MSTAQLWTGD SVRGDDASEK QDARRRSSEP ESHDGAALPF KAVGSGAPAF APPSLRKDDK AVRMPDLPFL SPAPTKTSPA AATGGAEESR RQLVGFAQEA
201: ARAAAALAPA APSLGLQAQS QQTAQQQQQA RKARRCWSPE LHRQFVTALH QLGGPQVATP KQIRELMKVD GLTNDEVKSH LQKYRLHNRR APGSPAANRP
301: IVLMGGLWIT QDQSSSQSGG SPPGPLHFSS SGVAASSVTV SGEEEDGRSE SYGWK
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.