Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017795.1-P | Field mustard | nucleus | 98.3 | 98.3 |
| CDY40421 | Canola | nucleus | 38.78 | 69.94 |
| CDY72117 | Canola | nucleus | 41.84 | 67.21 |
| CDX75610 | Canola | nucleus | 72.11 | 65.23 |
| CDX69259 | Canola | nucleus | 71.43 | 65.22 |
| CDY44057 | Canola | nucleus | 71.09 | 65.11 |
| CDX69206 | Canola | nucleus | 27.89 | 52.56 |
| CDY22459 | Canola | nucleus | 66.67 | 48.16 |
| KRH28514 | Soybean | nucleus | 38.44 | 33.04 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 43.2 | 32.9 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 37.41 | 32.45 |
| Solyc02g090400.2.1 | Tomato | nucleus | 39.8 | 31.54 |
| PGSC0003DMT400026096 | Potato | nucleus | 38.78 | 31.23 |
| KRH76947 | Soybean | nucleus | 38.78 | 31.06 |
| Zm00001d034160_P001 | Maize | nucleus | 34.69 | 30.18 |
| KRH04674 | Soybean | nucleus | 37.07 | 29.86 |
| KXG37487 | Sorghum | nucleus | 34.69 | 29.82 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 33.67 | 29.64 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 33.67 | 29.64 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 31.97 | 29.19 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 32.99 | 29.04 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 36.73 | 29.03 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 38.44 | 28.83 |
| Os07t0119300-01 | Rice | nucleus | 34.69 | 28.73 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 33.67 | 28.7 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 36.73 | 28.5 |
| Os03t0241001-00 | Rice | plastid | 13.95 | 28.47 |
| Os03t0764600-01 | Rice | nucleus | 33.67 | 28.45 |
| GSMUA_Achr10P... | Banana | nucleus | 37.07 | 28.09 |
| GSMUA_Achr10P... | Banana | nucleus | 36.73 | 27.62 |
| CDY51048 | Canola | nucleus | 28.23 | 27.57 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 35.03 | 27.47 |
| Zm00001d013202_P001 | Maize | nucleus | 33.67 | 27.35 |
| CDY59732 | Canola | nucleus | 23.81 | 27.34 |
| CDY20522 | Canola | nucleus | 30.61 | 27.27 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 34.69 | 27.06 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 32.65 | 27.04 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 34.69 | 26.98 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 34.35 | 26.72 |
| CDY51129 | Canola | nucleus | 28.91 | 26.56 |
| Zm00001d018698_P001 | Maize | nucleus | 33.33 | 26.56 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 30.61 | 26.47 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 31.97 | 26.4 |
| HORVU2Hr1G006350.1 | Barley | plastid | 11.9 | 26.12 |
| EER95793 | Sorghum | nucleus | 34.35 | 25.7 |
| Zm00001d030891_P001 | Maize | nucleus | 31.97 | 25.68 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 31.97 | 25.68 |
| CDY71327 | Canola | nucleus | 28.91 | 25.45 |
| HORVU6Hr1G034270.1 | Barley | plastid | 11.56 | 25.37 |
| CDX81535 | Canola | nucleus | 29.25 | 25.07 |
| CDX95998 | Canola | nucleus | 30.61 | 25.07 |
| TraesCS5D01G411800.1 | Wheat | plastid | 33.33 | 24.87 |
| CDX83554 | Canola | nucleus | 29.93 | 24.86 |
| CDY13584 | Canola | nucleus | 29.93 | 24.65 |
| CDY04180 | Canola | nucleus | 28.23 | 24.63 |
| CDY50179 | Canola | nucleus | 28.91 | 24.57 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 31.63 | 24.54 |
| CDY39188 | Canola | nucleus | 28.91 | 24.43 |
| CDY19382 | Canola | nucleus | 28.23 | 24.41 |
| CDY38609 | Canola | nucleus | 29.93 | 24.38 |
| CDX97993 | Canola | nucleus | 28.57 | 24.35 |
| CDY21091 | Canola | nucleus | 28.57 | 24.28 |
| CDY54503 | Canola | nucleus | 30.27 | 24.18 |
| CDY02988 | Canola | nucleus | 34.69 | 24.11 |
| CDY51214 | Canola | nucleus | 34.69 | 24.11 |
| CDY70722 | Canola | nucleus | 25.17 | 24.1 |
| Os12t0586300-00 | Rice | extracellular | 31.97 | 23.8 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 32.31 | 23.63 |
| CDY16075 | Canola | nucleus | 27.89 | 23.5 |
| OQU79454 | Sorghum | nucleus | 31.97 | 23.1 |
| CDY71874 | Canola | nucleus | 26.87 | 21.88 |
| HORVU2Hr1G062670.3 | Barley | plastid | 31.97 | 21.71 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 28.23 | 18.2 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 12.24 | 17.82 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 2.38 | 11.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078HW62 | UniProt:A0A078HW62 | EnsemblPlants:CDY42715 | ProteinID:CDY42715 |
| ProteinID:CDY42715.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00075251001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF2 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE1B47 | SEG:seg | : |
Description
BnaA03g53680DBnaA03g53680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW62]
Coordinates
chrLK032532:-:197416..198640
Molecular Weight (calculated)
33756.2 Da
IEP (calculated)
8.018
GRAVY (calculated)
-0.802
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLDLNLYSL AKPLSQFLND VSKIRDNHSK LFEIDEYVGK LEEERKKIDV FKRELPICML LMNEAIERLK EEASSVKLEI DNKKNWMNSA QLWISNTNSQ
101: LPSTNGEEDR CVTQTCSNNN NSNQGGAILS FNVPPRPPPL SLRTPILTDY SSRIEQSHPI QKKELRRRWS EDLHRRFVDA LQMIGGSQVA TPKQIKDIMK
201: VDGLTNDEIK SHLQCEMINL LQKYRMHIHK HPAKILTASD QHGLSRSDSP QGPLVDRGLF SNNGHSSEEE EKSDGRSWKS ESRRKRQGLL DLEL
101: LPSTNGEEDR CVTQTCSNNN NSNQGGAILS FNVPPRPPPL SLRTPILTDY SSRIEQSHPI QKKELRRRWS EDLHRRFVDA LQMIGGSQVA TPKQIKDIMK
201: VDGLTNDEIK SHLQCEMINL LQKYRMHIHK HPAKILTASD QHGLSRSDSP QGPLVDRGLF SNNGHSSEEE EKSDGRSWKS ESRRKRQGLL DLEL
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
Arabidopsis Description
HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.