Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034160_P001 | Maize | nucleus | 88.6 | 89.64 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 61.99 | 63.47 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 61.4 | 62.87 |
| Os03t0764600-01 | Rice | nucleus | 63.74 | 62.64 |
| TraesCS5D01G411800.1 | Wheat | plastid | 61.7 | 53.55 |
| EER95793 | Sorghum | nucleus | 54.68 | 47.58 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 46.49 | 41.95 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 40.06 | 40.41 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 38.89 | 39.82 |
| GSMUA_Achr10P... | Banana | nucleus | 44.74 | 39.43 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 42.4 | 38.98 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 51.17 | 38.38 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 43.86 | 38.27 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 38.01 | 38.24 |
| GSMUA_Achr10P... | Banana | nucleus | 43.27 | 37.85 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 40.06 | 37.43 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 34.8 | 36.96 |
| CDX69259 | Canola | nucleus | 34.5 | 36.65 |
| CDY51048 | Canola | nucleus | 31.87 | 36.21 |
| Bra018794.1-P | Field mustard | nucleus | 31.87 | 36.09 |
| CDX75610 | Canola | nucleus | 33.63 | 35.38 |
| OQU79454 | Sorghum | nucleus | 41.81 | 35.14 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 38.6 | 34.83 |
| Bra011720.1-P | Field mustard | nucleus | 33.04 | 34.77 |
| CDY59732 | Canola | nucleus | 26.02 | 34.77 |
| Bra017795.1-P | Field mustard | nucleus | 29.82 | 34.69 |
| CDY42715 | Canola | nucleus | 29.82 | 34.69 |
| Bra010581.1-P | Field mustard | nucleus | 31.58 | 34.62 |
| CDY44057 | Canola | nucleus | 32.46 | 34.58 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 40.35 | 34.41 |
| Bra040662.1-P | Field mustard | nucleus | 32.75 | 34.36 |
| CDY40421 | Canola | nucleus | 16.37 | 34.36 |
| KRH28514 | Soybean | nucleus | 33.92 | 33.92 |
| CDY71327 | Canola | nucleus | 32.75 | 33.53 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 37.72 | 33.42 |
| KRG89233 | Soybean | nucleus | 35.67 | 33.15 |
| AT4G37180.2 | Thale cress | nucleus | 34.5 | 32.51 |
| KRH50234 | Soybean | nucleus | 38.89 | 32.28 |
| CDY72117 | Canola | nucleus | 17.25 | 32.24 |
| KRH71185 | Soybean | nucleus | 38.6 | 31.88 |
| KRH49770 | Soybean | nucleus | 34.21 | 31.88 |
| PGSC0003DMT400066352 | Potato | nucleus | 37.43 | 31.84 |
| AT1G49560.1 | Thale cress | nucleus | 30.99 | 31.83 |
| PGSC0003DMT400026096 | Potato | nucleus | 33.92 | 31.78 |
| Solyc01g108300.2.1 | Tomato | nucleus | 37.43 | 31.6 |
| KRH76947 | Soybean | nucleus | 33.63 | 31.34 |
| Solyc02g090400.2.1 | Tomato | nucleus | 33.92 | 31.27 |
| KRH04674 | Soybean | nucleus | 33.33 | 31.23 |
| CDX69206 | Canola | nucleus | 13.74 | 30.13 |
| CDY22459 | Canola | nucleus | 30.12 | 25.31 |
| EES02372 | Sorghum | nucleus | 31.58 | 21.51 |
| EES15678 | Sorghum | nucleus | 28.66 | 21.21 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 12.28 | 20.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | UniProt:A0A1B6QHV1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EnsemblPlants:KXG37487 | ProteinID:KXG37487 | ProteinID:KXG37487.1 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF6 |
| InterPro:SANT/Myb | EnsemblPlantsGene:SORBI_3001G078900 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00081AC197 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:-:6060777..6062851
Molecular Weight (calculated)
36146.7 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.441
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDVGEIGM GLDLGLDLRL FAARTAGGMA AAAAKGAPAG IESCIRSLEE ERKKIEVFRR ELPLCARLLA DVIDELKEEA AKRGGGDADA KADDGDKRKW
101: MSTAQLWVDS EAKSDESDKE HQSEITSPEP KLLGGAPMPI RAVAAVPPLP PPFFRREDSS AGTCLSLVSP ASKAPISPVA TSDNASGRFC PTMPPSGSSG
201: VTLHSQAQQQ ASRKARRCWS PELHRQFVAA LHQLGGPQVA TPKQIREVMQ VDGLTNDEVK SHLQKYRLHN RRSPGVAPVS QPIMLVGGLW APQEQSSSGS
301: PQGPLQFSGS GVAISTATVG GDSSGSSSDE DDKSEGYSRK CV
101: MSTAQLWVDS EAKSDESDKE HQSEITSPEP KLLGGAPMPI RAVAAVPPLP PPFFRREDSS AGTCLSLVSP ASKAPISPVA TSDNASGRFC PTMPPSGSSG
201: VTLHSQAQQQ ASRKARRCWS PELHRQFVAA LHQLGGPQVA TPKQIREVMQ VDGLTNDEVK SHLQKYRLHN RRSPGVAPVS QPIMLVGGLW APQEQSSSGS
301: PQGPLQFSGS GVAISTATVG GDSSGSSSDE DDKSEGYSRK CV
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.