Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011720.1-P | Field mustard | nucleus | 98.15 | 98.15 |
| CDX69259 | Canola | nucleus | 92.0 | 92.86 |
| CDY44057 | Canola | nucleus | 76.0 | 76.95 |
| CDY42715 | Canola | nucleus | 65.23 | 72.11 |
| AT4G37180.2 | Thale cress | nucleus | 78.15 | 69.97 |
| CDX69206 | Canola | nucleus | 32.0 | 66.67 |
| CDY72117 | Canola | nucleus | 36.92 | 65.57 |
| CDY40421 | Canola | nucleus | 32.0 | 63.8 |
| CDY22459 | Canola | nucleus | 69.85 | 55.77 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 37.54 | 35.99 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 42.15 | 35.49 |
| Solyc02g090400.2.1 | Tomato | nucleus | 40.0 | 35.04 |
| PGSC0003DMT400026096 | Potato | nucleus | 39.08 | 34.79 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 35.38 | 34.43 |
| KRH28514 | Soybean | nucleus | 36.0 | 34.21 |
| Zm00001d034160_P001 | Maize | nucleus | 35.38 | 34.02 |
| KXG37487 | Sorghum | nucleus | 35.38 | 33.63 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 34.15 | 33.23 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 32.92 | 33.23 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 33.85 | 32.93 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 39.69 | 32.91 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 37.85 | 32.45 |
| KRH76947 | Soybean | nucleus | 36.62 | 32.43 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 36.92 | 32.26 |
| CDY59732 | Canola | nucleus | 25.23 | 32.03 |
| GSMUA_Achr10P... | Banana | nucleus | 38.15 | 31.71 |
| CDY51048 | Canola | nucleus | 29.23 | 31.56 |
| Os03t0764600-01 | Rice | nucleus | 33.54 | 31.32 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 33.23 | 31.3 |
| Zm00001d013202_P001 | Maize | nucleus | 34.46 | 30.94 |
| Os07t0119300-01 | Rice | nucleus | 33.54 | 30.7 |
| GSMUA_Achr10P... | Banana | nucleus | 36.62 | 30.67 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 33.23 | 30.42 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 31.38 | 30.0 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 32.62 | 29.78 |
| KRH04674 | Soybean | nucleus | 33.23 | 29.59 |
| Zm00001d018698_P001 | Maize | nucleus | 33.54 | 29.54 |
| CDY20522 | Canola | nucleus | 29.85 | 29.39 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 32.92 | 29.23 |
| Os03t0241001-00 | Rice | plastid | 12.92 | 29.17 |
| CDY51129 | Canola | nucleus | 28.62 | 29.06 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 33.23 | 28.8 |
| CDY71327 | Canola | nucleus | 29.54 | 28.74 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 33.23 | 28.57 |
| TraesCS5D01G411800.1 | Wheat | plastid | 34.46 | 28.43 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 32.92 | 28.38 |
| HORVU2Hr1G006350.1 | Barley | plastid | 11.69 | 28.36 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 32.92 | 28.31 |
| CDY16075 | Canola | nucleus | 29.85 | 27.79 |
| EER95793 | Sorghum | nucleus | 33.54 | 27.74 |
| HORVU6Hr1G034270.1 | Barley | plastid | 11.38 | 27.61 |
| CDY04180 | Canola | nucleus | 28.62 | 27.6 |
| CDX95998 | Canola | nucleus | 30.46 | 27.58 |
| CDX83554 | Canola | nucleus | 29.85 | 27.4 |
| CDY39188 | Canola | nucleus | 29.23 | 27.3 |
| CDX97993 | Canola | nucleus | 28.92 | 27.25 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 31.69 | 27.18 |
| CDY13584 | Canola | nucleus | 29.85 | 27.17 |
| CDY50179 | Canola | nucleus | 28.62 | 26.88 |
| CDY38609 | Canola | nucleus | 29.85 | 26.87 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 33.23 | 26.87 |
| CDY19382 | Canola | nucleus | 28.0 | 26.76 |
| CDY21091 | Canola | nucleus | 28.31 | 26.59 |
| CDX81535 | Canola | nucleus | 28.0 | 26.53 |
| CDY54503 | Canola | nucleus | 29.85 | 26.36 |
| Zm00001d030891_P001 | Maize | nucleus | 29.23 | 25.96 |
| Os12t0586300-00 | Rice | extracellular | 31.38 | 25.82 |
| CDY02988 | Canola | nucleus | 33.54 | 25.77 |
| CDY51214 | Canola | nucleus | 33.54 | 25.77 |
| CDY70722 | Canola | nucleus | 24.0 | 25.41 |
| HORVU2Hr1G062670.3 | Barley | plastid | 32.62 | 24.48 |
| OQU79454 | Sorghum | nucleus | 30.46 | 24.32 |
| CDY71874 | Canola | nucleus | 25.54 | 22.99 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 28.92 | 20.61 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 12.62 | 20.3 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 2.46 | 12.7 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078CFJ2 | EnsemblPlants:CDX75610 | ProteinID:CDX75610 | ProteinID:CDX75610.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00121520001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF2 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE2958 | SEG:seg |
Description
BnaA01g00920D
Coordinates
chrLK031804:-:1902266..1903820
Molecular Weight (calculated)
37033.9 Da
IEP (calculated)
7.369
GRAVY (calculated)
-0.882
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQTDSDKMG LNLNLSMYSL AKPLSQFLDE VSRIKDYDSK LSEIDGYVGK LEEERRKIDV FKRELPLCML LLNEAIETLK EEASSSVMMA SDGKLDVGEG
101: AKVESDNKKN WMSSAQLWIS NPNSQLQSTN EKEDRSVTHR PNQRGAFTPF NLPPPPPPPL TLRTPPSEIL MDYNHQFNKP MQSLHSQKKE QRRRWSQELH
201: RKFVDALHSL GGSQVATPKQ IRDMMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPAKTLSSS DQPVLLDKET QSLISLTRSD SPQSPLVDGC LFNNNGHSSE
301: DEEKSDGRSW KSESNKKRQA LDLEL
101: AKVESDNKKN WMSSAQLWIS NPNSQLQSTN EKEDRSVTHR PNQRGAFTPF NLPPPPPPPL TLRTPPSEIL MDYNHQFNKP MQSLHSQKKE QRRRWSQELH
201: RKFVDALHSL GGSQVATPKQ IRDMMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPAKTLSSS DQPVLLDKET QSLISLTRSD SPQSPLVDGC LFNNNGHSSE
301: DEEKSDGRSW KSESNKKRQA LDLEL
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
Arabidopsis Description
HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.