Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G075300.1 | Wheat | nucleus | 96.53 | 96.02 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 96.53 | 95.77 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 94.4 | 93.65 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 14.93 | 88.89 |
| HORVU6Hr1G034270.1 | Barley | plastid | 27.47 | 76.87 |
| HORVU2Hr1G006350.1 | Barley | plastid | 27.2 | 76.12 |
| Os12t0586300-00 | Rice | extracellular | 69.87 | 66.33 |
| Zm00001d030891_P001 | Maize | nucleus | 63.73 | 65.3 |
| OQU79454 | Sorghum | nucleus | 68.27 | 62.9 |
| Os03t0241001-00 | Rice | plastid | 21.87 | 56.94 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 40.53 | 44.84 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 43.47 | 43.82 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 36.53 | 42.55 |
| GSMUA_Achr10P... | Banana | nucleus | 43.73 | 42.27 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 41.87 | 41.42 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 36.0 | 40.42 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 41.87 | 40.05 |
| GSMUA_Achr10P... | Banana | nucleus | 41.6 | 39.9 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 38.67 | 39.62 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 36.8 | 38.76 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 38.67 | 38.26 |
| CDY40421 | Canola | nucleus | 16.27 | 37.42 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 33.07 | 36.47 |
| CDY72117 | Canola | nucleus | 17.33 | 35.52 |
| CDY42715 | Canola | nucleus | 27.47 | 35.03 |
| CDY51048 | Canola | nucleus | 27.73 | 34.55 |
| PGSC0003DMT400026096 | Potato | nucleus | 33.6 | 34.52 |
| Solyc02g090400.2.1 | Tomato | nucleus | 34.13 | 34.5 |
| CDX69259 | Canola | nucleus | 29.6 | 34.47 |
| Bra018794.1-P | Field mustard | nucleus | 27.73 | 34.44 |
| Bra017795.1-P | Field mustard | nucleus | 26.93 | 34.35 |
| KRH28514 | Soybean | nucleus | 31.2 | 34.21 |
| PGSC0003DMT400066352 | Potato | nucleus | 36.53 | 34.08 |
| TraesCS5D01G411800.1 | Wheat | plastid | 35.73 | 34.01 |
| KRH50234 | Soybean | nucleus | 37.33 | 33.98 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 36.27 | 33.92 |
| Solyc01g108300.2.1 | Tomato | nucleus | 36.53 | 33.83 |
| Bra010581.1-P | Field mustard | nucleus | 28.0 | 33.65 |
| CDY44057 | Canola | nucleus | 28.8 | 33.64 |
| KRH71185 | Soybean | nucleus | 37.07 | 33.57 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 34.4 | 33.42 |
| Bra011720.1-P | Field mustard | nucleus | 28.8 | 33.23 |
| CDX75610 | Canola | nucleus | 28.8 | 33.23 |
| KRG89233 | Soybean | nucleus | 32.53 | 33.15 |
| Bra040662.1-P | Field mustard | nucleus | 28.8 | 33.13 |
| KRH49770 | Soybean | nucleus | 32.27 | 32.97 |
| CDY59732 | Canola | nucleus | 22.13 | 32.42 |
| CDY71327 | Canola | nucleus | 28.8 | 32.34 |
| AT4G37180.2 | Thale cress | nucleus | 31.2 | 32.23 |
| CDX69206 | Canola | nucleus | 13.33 | 32.05 |
| KRH76947 | Soybean | nucleus | 31.2 | 31.88 |
| AT1G49560.1 | Thale cress | nucleus | 28.27 | 31.83 |
| KRH04674 | Soybean | nucleus | 30.4 | 31.23 |
| CDY22459 | Canola | nucleus | 27.2 | 25.06 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 25.87 | 24.13 |
| TraesCS3D01G125300.1 | Wheat | nucleus | 29.33 | 23.31 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 10.67 | 19.8 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G081000.1 | EnsemblPlantsGene:TraesCS5D01G081000 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF2 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | MapMan:15.5.2.3 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:81149141..81151210
Molecular Weight (calculated)
40005.6 Da
IEP (calculated)
8.735
GRAVY (calculated)
-0.712
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSAVQKEA VVLNGGGGGA GEDHRLRALA ARTVTDSLRA AVARSSSAEK AARLEECARS LEAEKAKMEV FRRELPISVH LIADVIEWLK DEVAQHRRPA
101: PDQLLAPAPA PAPPAKRKAE GVKTEADASD KRSWMSSAQL WTCGSHSSTS NSNGDSIKKQ AQKVSNAFMP LNGLPTLAKS SERPEAAAMA VPELSLSSPA
201: IDAPCPTAPS ADSSAVTDAG AQREQQSAQR KARRCWSPEL HRRFVAALQR LGGPQVATPK QIREMMKVDG LTNDEVKSHL QKYRLHTRRA SDGDQQQSAS
301: AGQWPRPEQY TTSQHSSSQS GSPQGPLQLT VSSRGMSVTV GDSCDGGEEN EEEDGKSASY SWGMQQKGTK ASSSS
101: PDQLLAPAPA PAPPAKRKAE GVKTEADASD KRSWMSSAQL WTCGSHSSTS NSNGDSIKKQ AQKVSNAFMP LNGLPTLAKS SERPEAAAMA VPELSLSSPA
201: IDAPCPTAPS ADSSAVTDAG AQREQQSAQR KARRCWSPEL HRRFVAALQR LGGPQVATPK QIREMMKVDG LTNDEVKSHL QKYRLHTRRA SDGDQQQSAS
301: AGQWPRPEQY TTSQHSSSQS GSPQGPLQLT VSSRGMSVTV GDSCDGGEEN EEEDGKSASY SWGMQQKGTK ASSSS
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
Arabidopsis Description
HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.