Factsheet for VIT_03s0063g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108300.2.1	Tomato	nucleus	61.1	60.49
PGSC0003DMT400066352	Potato	nucleus	60.35	60.2
KRH50234	Soybean	nucleus	59.85	58.25
KRH71185	Soybean	nucleus	60.1	58.21
KRH49770	Soybean	nucleus	52.12	56.95
KRG89233	Soybean	nucleus	51.12	55.71
VIT_07s0197g00060.t01	Wine grape	nucleus	51.12	53.11
CDY51048	Canola	nucleus	34.41	45.85
Bra018794.1-P	Field mustard	nucleus	34.41	45.7
GSMUA_Achr7P00660_001	Banana	nucleus	38.4	45.43
CDY71327	Canola	nucleus	36.16	43.41
AT1G49560.1	Thale cress	nucleus	35.91	43.24
GSMUA_Achr4P28210_001	Banana	nucleus	34.66	43.17
GSMUA_Achr10P...	Banana	nucleus	41.65	43.04
GSMUA_Achr6P34680_001	Banana	nucleus	40.15	42.48
Bra040662.1-P	Field mustard	nucleus	34.41	42.33
Os07t0119300-01	Rice	nucleus	37.16	41.97
CDY59732	Canola	nucleus	26.68	41.8
GSMUA_Achr4P23210_001	Banana	nucleus	38.65	41.67
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	34.66	41.62
GSMUA_Achr9P26570_001	Banana	nucleus	40.65	41.58
GSMUA_Achr2P13380_001	Banana	nucleus	37.66	41.26
Zm00001d007962_P001	Maize	extracellular, nucleus	35.41	41.16
Zm00001d034160_P001	Maize	nucleus	34.41	40.83
GSMUA_Achr10P...	Banana	nucleus	39.4	40.41
KXG37487	Sorghum	nucleus	34.41	40.35
TraesCS2A01G264800.1	Wheat	nucleus	35.16	39.72
TraesCS2D01G259200.2	Wheat	nucleus	35.16	39.61
TraesCS5A01G401600.1	Wheat	nucleus	32.92	39.52
Zm00001d018698_P001	Maize	nucleus	35.91	39.02
TraesCS5B01G406300.2	Wheat	nucleus	32.42	38.92
Os03t0764600-01	Rice	nucleus	33.67	38.79
Zm00001d013202_P001	Maize	nucleus	34.66	38.4
EER95793	Sorghum	nucleus	37.41	38.17
GSMUA_Achr4P32500_001	Banana	nucleus	31.67	37.35
GSMUA_Achr6P00650_001	Banana	nucleus	35.16	37.2
HORVU5Hr1G018220.2	Barley	nucleus	34.41	36.51
TraesCS5D01G081000.1	Wheat	nucleus	33.92	36.27
TraesCS5A01G068900.2	Wheat	nucleus	34.16	36.24
TraesCS2B01G277300.1	Wheat	nucleus	35.66	35.57
TraesCS5B01G075300.1	Wheat	nucleus	33.42	35.54
Zm00001d030891_P001	Maize	nucleus	32.42	35.52
VIT_11s0016g04600.t01	Wine grape	nucleus	40.4	35.22
Os12t0586300-00	Rice	extracellular	34.41	34.94
VIT_01s0011g03110.t01	Wine grape	nucleus	30.92	34.83
Os03t0241001-00	Rice	plastid	12.47	34.72
HORVU6Hr1G034270.1	Barley	plastid	11.22	33.58
HORVU2Hr1G006350.1	Barley	plastid	11.22	33.58
TraesCS5D01G411800.1	Wheat	plastid	32.42	32.99
HORVU2Hr1G062670.3	Barley	plastid	35.41	32.79
OQU79454	Sorghum	nucleus	33.17	32.68
CDY29342	Canola	cytosol, mitochondrion, nucleus	14.71	29.21
HORVU5Hr1G097560.4	Barley	nucleus, plastid	27.93	24.56
HORVU4Hr1G032990.1	Barley	cytosol	2.99	19.05

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100267475	wikigene:100267475	MapMan:15.5.2.3	EMBL:AM468901	ProteinID:CAN81424
ProteinID:CAN81424.1	ProteinID:CBI32465	ProteinID:CBI32465.3	ncoils:Coil	UniProt:D7TPP2	EMBL:FN596006
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100267475
wikigene:LOC100267475	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003
PANTHER:PTHR31003:SF7	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGR:TC58085	TIGRFAMs:TIGR01557	UniParc:UPI0001BE3BAF
ArrayExpress:VIT_03s0063g01060	EnsemblPlantsGene:VIT_03s0063g01060	EnsemblPlants:VIT_03s0063g01060.t01	unigene:Vvi.6387	RefSeq:XP_002284970	RefSeq:XP_002284970.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:4488935..4491525

Molecular Weight (calculated)

44431.2 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.836

Length

401 amino acids

Sequence
(BLAST)

001: MGSIPPELSL DLRPSYMPKT INDFLSGIST IGDVSERVTK LDEFLKRLEE EMRKIDAFKR ELPLCMILLS DAILALKEEL LRSKASNVQP VLEEFIPLKK
101: DCDEEGGAKE EKECKDKKNW MSSVQLWNSD DSASTDHIYD KKQDSKLEIK QRVDEENRPA TEDPFQPCKS RTGGRAFLPF KGYSGFPVAT ARKEDKDELP
201: VHGLSLLTPG IKNPREESGS SGSKTSCSRG VSSSAPNLQP NLRTGPQPPQ QQTARKQRRC WSPELHRRFV NALQQLGGSQ AATPKQIREL MQVDGLTNDE
301: VKSHLQKYRL HTRRMPTTSA APPSNQPVVV LGSLWMPQDQ YGDSSKASSS QSASPQGPLQ LGGAAGGTST TGGDSMEDDE DEKSESYGWK SQVHKSVKED
401: V

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.