Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 60.94 | 77.23 |
| CDY51048 | Canola | nucleus | 66.02 | 56.15 |
| CDY71327 | Canola | nucleus | 70.7 | 54.19 |
| AT1G49560.1 | Thale cress | nucleus | 64.45 | 49.55 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 35.94 | 27.54 |
| CDY40421 | Canola | nucleus | 17.19 | 26.99 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 41.8 | 26.68 |
| KRG89233 | Soybean | nucleus | 38.28 | 26.63 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 35.16 | 26.47 |
| KRH49770 | Soybean | nucleus | 37.89 | 26.43 |
| Zm00001d034160_P001 | Maize | nucleus | 34.77 | 26.33 |
| KXG37487 | Sorghum | nucleus | 34.77 | 26.02 |
| CDY04180 | Canola | nucleus | 33.59 | 25.52 |
| CDY13584 | Canola | nucleus | 35.55 | 25.49 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 32.03 | 25.47 |
| CDX83554 | Canola | nucleus | 35.16 | 25.42 |
| Zm00001d013202_P001 | Maize | nucleus | 35.94 | 25.41 |
| HORVU6Hr1G034270.1 | Barley | plastid | 13.28 | 25.37 |
| HORVU2Hr1G006350.1 | Barley | plastid | 13.28 | 25.37 |
| CDX75610 | Canola | nucleus | 32.03 | 25.23 |
| CDX69259 | Canola | nucleus | 31.64 | 25.16 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 32.81 | 25.15 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 34.77 | 25.07 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 37.11 | 25.07 |
| Os03t0764600-01 | Rice | nucleus | 33.98 | 25.0 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 33.59 | 24.93 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 32.42 | 24.85 |
| CDX81535 | Canola | nucleus | 33.2 | 24.78 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 32.81 | 24.78 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 34.38 | 24.72 |
| KRH71185 | Soybean | nucleus | 39.84 | 24.64 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 36.33 | 24.54 |
| CDX95998 | Canola | nucleus | 34.38 | 24.51 |
| Solyc01g108300.2.1 | Tomato | nucleus | 38.67 | 24.44 |
| CDY39188 | Canola | nucleus | 33.2 | 24.43 |
| PGSC0003DMT400066352 | Potato | nucleus | 38.28 | 24.38 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 34.77 | 24.32 |
| GSMUA_Achr10P... | Banana | nucleus | 37.11 | 24.3 |
| KRH50234 | Soybean | nucleus | 39.06 | 24.27 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 37.11 | 24.23 |
| GSMUA_Achr10P... | Banana | nucleus | 36.72 | 24.23 |
| Os07t0119300-01 | Rice | nucleus | 33.59 | 24.23 |
| CDY20522 | Canola | nucleus | 30.86 | 23.94 |
| CDY38609 | Canola | nucleus | 33.59 | 23.82 |
| CDY42715 | Canola | nucleus | 27.34 | 23.81 |
| CDY51129 | Canola | nucleus | 29.69 | 23.75 |
| CDY54503 | Canola | nucleus | 33.98 | 23.64 |
| Os03t0241001-00 | Rice | plastid | 13.28 | 23.61 |
| CDY16075 | Canola | nucleus | 32.03 | 23.5 |
| CDX97993 | Canola | nucleus | 31.64 | 23.48 |
| CDY44057 | Canola | nucleus | 29.3 | 23.36 |
| Zm00001d018698_P001 | Maize | nucleus | 33.59 | 23.31 |
| CDY19382 | Canola | nucleus | 30.86 | 23.24 |
| CDY21091 | Canola | nucleus | 31.25 | 23.12 |
| CDY50179 | Canola | nucleus | 31.25 | 23.12 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 32.81 | 22.58 |
| CDY72117 | Canola | nucleus | 16.02 | 22.4 |
| EER95793 | Sorghum | nucleus | 34.38 | 22.39 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 34.77 | 22.14 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 32.42 | 22.13 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 32.42 | 21.96 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 32.03 | 21.75 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 32.03 | 21.69 |
| Os12t0586300-00 | Rice | extracellular | 32.42 | 21.01 |
| TraesCS5D01G411800.1 | Wheat | plastid | 32.03 | 20.81 |
| CDY02988 | Canola | nucleus | 33.98 | 20.57 |
| CDY51214 | Canola | nucleus | 33.98 | 20.57 |
| HORVU2Hr1G062670.3 | Barley | plastid | 34.38 | 20.32 |
| Zm00001d030891_P001 | Maize | nucleus | 28.52 | 19.95 |
| OQU79454 | Sorghum | nucleus | 30.47 | 19.16 |
| CDY70722 | Canola | nucleus | 22.27 | 18.57 |
| CDY22459 | Canola | nucleus | 29.3 | 18.43 |
| CDY71874 | Canola | nucleus | 25.78 | 18.28 |
| CDX69206 | Canola | nucleus | 9.77 | 16.03 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 26.95 | 15.13 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 1.17 | 4.76 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078J5W2 | UniProt:A0A078J5W2 | EnsemblPlants:CDY59732 | ProteinID:CDY59732 |
| ProteinID:CDY59732.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00027636001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF7 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EF3008 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g51600DBnaC05g51600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5W2]
Coordinates
chrLK033800:-:1300..2469
Molecular Weight (calculated)
29685.6 Da
IEP (calculated)
8.106
GRAVY (calculated)
-0.812
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGDELSL GQRRHTSKIM NVAVEKGCKL EEHVKKLEEE KRKIQGSELE LPLCLQILND AISYLKKETE TDTQPLLKDF ISLSKPIREE HDEEGEELFK
101: EKKFQLWREN DHISNARFSD TKIKNTLEIE RDEEKSSNSL YMLLSPGMTT PKGRRKLVAS SFVPQPPPYL QQQALRKQRR CWTPELHRLF VDALQQLGGP
201: GVAIPKQIRE HMQEESLTND EVKSHLQKYR LHIRKSDSNL EKQSVVVLGF NLWNSS
101: EKKFQLWREN DHISNARFSD TKIKNTLEIE RDEEKSSNSL YMLLSPGMTT PKGRRKLVAS SFVPQPPPYL QQQALRKQRR CWTPELHRLF VDALQQLGGP
201: GVAIPKQIRE HMQEESLTND EVKSHLQKYR LHIRKSDSNL EKQSVVVLGF NLWNSS
001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
Arabidopsis Description
HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.