Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038360.1-P | Field mustard | nucleus | 98.37 | 98.37 |
| CDX81535 | Canola | nucleus | 89.67 | 96.21 |
| CDX95998 | Canola | nucleus | 76.36 | 78.27 |
| CDY38609 | Canola | nucleus | 76.36 | 77.84 |
| AT1G68670.1 | Thale cress | nucleus | 73.91 | 76.84 |
| CDY51129 | Canola | nucleus | 49.46 | 56.88 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 53.8 | 55.62 |
| CDY20522 | Canola | nucleus | 49.73 | 55.45 |
| PGSC0003DMT400002162 | Potato | nucleus | 49.18 | 48.14 |
| CDX83554 | Canola | nucleus | 45.92 | 47.74 |
| KRH70595 | Soybean | nucleus | 47.55 | 47.17 |
| KRH75476 | Soybean | nucleus | 48.37 | 46.97 |
| CDY04180 | Canola | nucleus | 42.39 | 46.29 |
| CDY13584 | Canola | nucleus | 44.57 | 45.94 |
| CDY19382 | Canola | nucleus | 42.39 | 45.88 |
| Solyc05g009720.2.1 | Tomato | nucleus | 49.73 | 45.75 |
| CDY50179 | Canola | nucleus | 42.93 | 45.66 |
| GSMUA_Achr10P... | Banana | nucleus | 38.32 | 45.48 |
| CDY39188 | Canola | nucleus | 42.66 | 45.11 |
| CDY21091 | Canola | nucleus | 42.39 | 45.09 |
| CDY16075 | Canola | nucleus | 42.39 | 44.7 |
| KRH34759 | Soybean | nucleus | 45.92 | 44.13 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 40.76 | 44.12 |
| CDX97993 | Canola | nucleus | 41.3 | 44.06 |
| KRG92028 | Soybean | nucleus | 45.38 | 43.83 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 42.66 | 42.09 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 41.85 | 41.51 |
| GSMUA_Achr11P... | Banana | nucleus | 41.58 | 41.46 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 28.26 | 39.25 |
| Os02t0325600-01 | Rice | nucleus | 42.66 | 38.11 |
| CDY40421 | Canola | nucleus | 15.76 | 35.58 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 38.86 | 35.57 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 33.15 | 34.86 |
| CDY59732 | Canola | nucleus | 23.64 | 33.98 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 27.72 | 33.12 |
| CDY72117 | Canola | nucleus | 16.3 | 32.79 |
| EES15678 | Sorghum | nucleus | 40.76 | 32.47 |
| Zm00001d023411_P001 | Maize | nucleus | 39.4 | 32.01 |
| Zm00001d023402_P001 | Maize | nucleus | 39.13 | 31.37 |
| CDY44057 | Canola | nucleus | 26.9 | 30.84 |
| CDX69259 | Canola | nucleus | 26.9 | 30.75 |
| CDY42715 | Canola | nucleus | 24.18 | 30.27 |
| CDX75610 | Canola | nucleus | 26.36 | 29.85 |
| TraesCS2A01G116100.2 | Wheat | plastid | 38.32 | 29.68 |
| CDY51048 | Canola | nucleus | 23.64 | 28.9 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 39.67 | 28.24 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.5 | 27.88 |
| CDY70722 | Canola | nucleus | 22.55 | 27.04 |
| CDY71327 | Canola | nucleus | 24.46 | 26.95 |
| CDY71874 | Canola | nucleus | 25.82 | 26.32 |
| CDY02988 | Canola | nucleus | 30.16 | 26.24 |
| CDY51214 | Canola | nucleus | 29.89 | 26.0 |
| CDX69206 | Canola | nucleus | 10.05 | 23.72 |
| CDY22459 | Canola | nucleus | 25.82 | 23.34 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 10.6 | 19.31 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078IZB9 | UniProt:A0A078IZB9 | EnsemblPlants:CDY54503 | ProteinID:CDY54503 |
| ProteinID:CDY54503.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00014233001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF4 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE9D14 |
| SEG:seg | : | : | : | : | : |
Description
BnaA02g35660DBnaA02g35660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZB9]
Coordinates
chrLK033325:-:36195..38030
Molecular Weight (calculated)
40635.5 Da
IEP (calculated)
8.566
GRAVY (calculated)
-0.854
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MENDYAQKMQ RCHEYVEALK EEQKKIQVFQ RELPLCLELV TQAIEACRKE LSSTSTTSEQ CSEQTTSVSG GPVLEEFIPT KKIEENGEHE SPTPEEIGNN
101: VDKKKSDWLR SVQLWNPSPD TNEVSNPERV VGKKAKVVEV KPNNYNNCGG FQPFQREKKR ETDLQPAAVR AVALAPAVKV VASAPATTTS STTETCAVGK
201: EREEQVLQQQ SQSQTRRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR DHMKVDGLTN DEVKSHLQKY RLHTRRPATT VTAQGNGNSQ QPQFVVVGGI
301: WVPSPQEVPP PSDVANNGGG AYAPVTLQPP PQSLPPQSPK RSVERSSGRC NSQAASSSTN TTTSSPVS
101: VDKKKSDWLR SVQLWNPSPD TNEVSNPERV VGKKAKVVEV KPNNYNNCGG FQPFQREKKR ETDLQPAAVR AVALAPAVKV VASAPATTTS STTETCAVGK
201: EREEQVLQQQ SQSQTRRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR DHMKVDGLTN DEVKSHLQKY RLHTRRPATT VTAQGNGNSQ QPQFVVVGGI
301: WVPSPQEVPP PSDVANNGGG AYAPVTLQPP PQSLPPQSPK RSVERSSGRC NSQAASSSTN TTTSSPVS
001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
Arabidopsis Description
HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.