Factsheet for Os02t0325600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0803700-01
Os03t0586600-01
Os05t0105800-01
Os06t0173100-01
Os07t0463100-01
Os08t0426000-00
Os09t0287300-01
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	Os11t0171500-01	AT1G35670.1	19130088
AT1G25550.1	Os12t0169800-00	AT1G35670.1	19130088
AT1G68670.1	Os05t0105800-01	AT1G22630.1	21798944
AT1G68670.1	Os03t0586600-01	AT2G04630.1	21798944
AT1G68670.1	Os07t0463100-01	AT2G04630.1	21798944
AT1G68670.1	Os08t0426000-00	AT2G04630.1	21798944
AT1G68670.1	Os02t0803700-01	AT3G05530.1	21798944
AT1G68670.1	Os06t0173100-01	AT3G05530.1	21798944
AT1G68670.1	Os09t0287300-01	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G135600.1	Wheat	nucleus	58.98	69.43
TraesCS2D01G119100.1	Wheat	nucleus	67.72	69.4
EES15678	Sorghum	nucleus	66.02	58.87
Zm00001d023411_P001	Maize	nucleus	64.08	58.28
Zm00001d023402_P001	Maize	nucleus	64.81	58.17
TraesCS2A01G116100.2	Wheat	plastid	66.99	58.11
HORVU2Hr1G020140.3	Barley	nucleus, plastid	68.2	54.35
GSMUA_Achr6P09870_001	Banana	nucleus	42.96	52.06
GSMUA_Achr11P...	Banana	nucleus	46.36	51.76
GSMUA_Achr8P18270_001	Banana	nucleus	46.12	51.21
VIT_01s0011g03110.t01	Wine grape	nucleus	43.93	50.84
GSMUA_Achr10P...	Banana	nucleus	37.62	50.0
GSMUA_Achr3P21090_001	Banana	nucleus	44.66	49.33
PGSC0003DMT400002162	Potato	nucleus	42.48	46.54
AT1G25550.1	Thale cress	nucleus	38.11	45.64
AT1G68670.1	Thale cress	nucleus	38.35	44.63
CDY51129	Canola	nucleus	34.22	44.06
CDX81535	Canola	nucleus	36.41	43.73
CDY20522	Canola	nucleus	34.95	43.64
Solyc05g009720.2.1	Tomato	nucleus	42.23	43.5
CDY54503	Canola	nucleus	38.11	42.66
Bra038360.1-P	Field mustard	nucleus	37.86	42.39
CDY38609	Canola	nucleus	37.14	42.38
CDX95998	Canola	nucleus	36.89	42.34
KRH75476	Soybean	nucleus	38.84	42.22
Bra004330.1-P	Field mustard	nucleus	36.65	42.06
KRH34759	Soybean	nucleus	39.08	42.04
CDY04180	Canola	nucleus	34.22	41.84
KRH70595	Soybean	nucleus	37.38	41.51
Bra012471.1-P	Field mustard	nucleus	32.77	41.03
CDX83554	Canola	nucleus	35.19	40.96
KRG92028	Soybean	nucleus	37.62	40.68
AT1G13300.1	Thale cress	nucleus	33.5	40.12
CDY13584	Canola	nucleus	34.71	40.06
Bra017349.1-P	Field mustard	nucleus	34.47	39.66
CDY39188	Canola	nucleus	33.5	39.66
Bra025161.1-P	Field mustard	nucleus	36.16	39.42
CDY16075	Canola	nucleus	33.01	38.97
CDY19382	Canola	nucleus	32.04	38.82
CDY50179	Canola	nucleus	32.04	38.15
Bra016734.1-P	Field mustard	nucleus	32.04	38.15
CDY21091	Canola	nucleus	32.04	38.15
CDX97993	Canola	nucleus	31.8	37.97
AT3G25790.1	Thale cress	nucleus	32.77	37.82
Bra019824.1-P	Field mustard	nucleus	31.8	35.89
Os03t0241001-00	Rice	plastid	10.44	29.86
Os03t0764600-01	Rice	nucleus	23.79	28.16
Os07t0119300-01	Rice	nucleus	23.54	27.32
Os12t0586300-00	Rice	extracellular	25.97	27.09
Os01t0176700-01	Rice	nucleus	30.34	26.21

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EntrezGene:4329184	EMBL:AK064355	EMBL:AK101809	ProteinID:BAD15692.1
ProteinID:BAF08616.1	ProteinID:BAS78407.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0045892	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants
EnsemblPlantsGene:Os02g0325600	EnsemblPlants:Os02t0325600-01	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16
UniProt:Q6Z869	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0000358B2D	RefSeq:XP_015623779.1
SEG:seg	:	:	:	:	:

Description

NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1Nitrate-inducible and autorepressible transcriptional repressor, Nitrogen response (Os02t0325600-01);Similar to Phosphate starvation response regulator-like protein. (Os02t0325600-02)

Coordinates

chr2:+:13096088..13098218

Molecular Weight (calculated)

44581.5 Da

IEP (calculated)

6.634

GRAVY (calculated)

-0.926

Length

412 amino acids

Sequence
(BLAST)

001: MEVDHADRDG ARRRCREYLL ALEEERRKIQ VFQRELPLCF DLVTQTIEGM RSQMDAAGSE ETVSDQGPPP VLEEFIPLKP SLSLSSSEEE STHADAAKSG
101: KKEEAETSER HSSPPPPPPE AKKVTPDWLQ SVQLWSQEEP QQPSSPSPTP TKDLPCKPVA LNARKAGGAF QPFEKEKRAE LPASSTTAAA SSTVVGDSGD
201: KPTDDDTEKH METDKDNDKD AKDKDKEGQS QPHRKPRRCW APELHRRFLQ ALQQLGGSHV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSSTGQS
301: SAAAGVPAPP APQFVVVGSI WVPPPEYAAA AAAQQHVQLA AAGNNASGSA NPVYAPVAML PAGLQPHSHR KQHQQQQQGQ RHSGSEGRRS GDAGDGSSSS
401: PAVSSSSQTT SA

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.