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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 18022940
plastid: 27992503
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0739600-01
Os02t0739700-01
Os06t0246500-01
Os08t0431300-01
Os09t0408600-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G05530.1 Os02t0739600-01 AT1G59900.1 24846764
AT3G05530.1 Os02t0739700-01 AT1G59900.1 24846764
AT3G05530.1 Os06t0246500-01 AT1G59900.1 24846764
AT3G05530.1 Os08t0431300-01 AT3G25860.1 24846764
AT3G05530.1 Os09t0408600-01 AT3G25860.1 24846764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os06t0173100-01 Rice cytosol, nucleus, plasma membrane 96.97 96.97
KXG31298 Sorghum cytosol 96.27 96.5
HORVU6Hr1G087650.1 Barley cytosol, plasma membrane 85.78 95.83
GSMUA_Achr5P04520_001 Banana cytosol 90.21 95.56
VIT_14s0060g02260.t01 Wine grape cytosol 90.21 95.56
TraesCS7B01G036400.1 Wheat cytosol 93.94 94.38
KRG92899 Soybean cytosol, nucleus 93.01 94.33
VIT_05s0020g01180.t01 Wine grape cytosol 93.01 94.33
KRH33891 Soybean endoplasmic reticulum, nucleus 92.77 94.09
TraesCS3A01G421900.1 Wheat cytosol 94.41 93.32
TraesCS3B01G457100.1 Wheat cytosol, golgi 94.41 93.32
TraesCS7D01G134800.1 Wheat cytosol 93.24 93.24
TraesCS3D01G417000.1 Wheat cytosol 94.17 93.09
Bra039431.1-P Field mustard cytosol 91.84 92.92
CDY05176 Canola cytosol 91.84 92.92
CDY27761 Canola cytosol 91.84 92.92
AT3G05530.1 Thale cress cytosol 91.61 92.69
CDY40714 Canola cytosol 91.61 92.69
CDY18801 Canola cytosol 91.61 92.69
CDY18782 Canola cytosol 91.61 92.69
CDX74142 Canola cytosol 91.61 92.69
Bra040214.1-P Field mustard cytosol 91.61 92.69
Bra001152.1-P Field mustard cytosol 91.61 92.69
Solyc01g099760.2.1 Tomato nucleus, plastid 91.38 92.67
PGSC0003DMT400063574 Potato cytosol 91.38 92.67
Zm00001d018409_P007 Maize cytosol 93.94 89.96
KRH68501 Soybean nucleus 88.11 88.94
KRG96790 Soybean mitochondrion 64.57 83.43
Os04t0284600-01 Rice cytosol 54.78 65.83
Os02t0784700-00 Rice cytosol 22.14 50.53
Os02t0199900-01 Rice nucleus, plasma membrane 37.53 40.25
Os06t0600100-01 Rice plasma membrane 39.63 40.19
Os07t0691800-01 Rice cytosol, nucleus, plasma membrane, plastid 41.96 40.18
Os06t0192600-01 Rice cytosol, nucleus, plasma membrane, plastid 39.63 39.91
Os03t0298400-01 Rice plasma membrane 41.72 39.78
Os06t0607800-01 Rice nucleus 36.83 39.4
Os02t0205300-01 Rice cytosol 38.93 39.39
Os02t0325100-01 Rice plastid 38.0 38.9
Os09t0560200-01 Rice cytosol, mitochondrion 33.33 31.92
Os05t0376200-00 Rice cytosol 24.94 27.37
Os10t0442600-01 Rice cytosol, nucleus, plasma membrane, plastid 10.49 23.08
Os04t0498800-01 Rice cytosol 29.14 21.63
Os03t0151800-02 Rice cytosol, extracellular, nucleus, plasma membrane, plastid 29.14 15.45
Os06t0109400-01 Rice cytosol 25.41 14.16
Os08t0413000-00 Rice mitochondrion 28.44 13.5
Os08t0556550-01 Rice cytosol 3.26 13.08
Os04t0617600-01 Rice cytosol 25.17 11.49
Os06t0600301-00 Rice plasma membrane 0.93 1.77
Os11t0220400-01 Rice mitochondrion 1.4 1.28
Os08t0556400-01 Rice endoplasmic reticulum, golgi, plasma membrane 0.23 0.14
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.5Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300EntrezGene:4331050
InterPro:AAA+_ATPaseEMBL:AB037155EMBL:AK067051EMBL:AK103936InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_core
ProteinID:BAD36042.1ProteinID:BAD36043.1ProteinID:BAF10342.1ProteinID:BAS81442.1ncoils:CoilEMBL:D17788
GO:GO:0000166GO:GO:0000502GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0005829GO:GO:0006139GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0008540
GO:GO:0009056GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0017025
GO:GO:0019538GO:GO:0030163GO:GO:0030433GO:GO:0031595GO:GO:0031597GO:GO:0036402
GO:GO:0045899GO:GO:1901800EnsemblPlantsGene:Os02g0803700EnsemblPlants:Os02t0803700-01InterPro:P-loop_NTPaseUniProt:P46465
PFAM:PF00004ScanProsite:PS00674InterPro:PSMC3PANTHER:PTHR23073PANTHER:PTHR23073:SF7SMART:SM00382
SUPFAM:SSF52540TIGRFAMs:TIGR01242UniParc:UPI00000A345CRefSeq:XP_015625151.1SEG:seg:
Description
rice homolog of HIV-1 Tat binding protein-1, homolog of human TBP-1, 19S regulatory particle ATPase subunit 5a, RP triple A-ATPase 5aSimilar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1). (Os02t0803700-01);Similar to 26S protease regulatory subunit 6A homolog. (Os02t0803700-03)
Coordinates
chr2:-:34266081..34269923
Molecular Weight (calculated)
47800.2 Da
IEP (calculated)
4.680
GRAVY (calculated)
-0.427
Length
429 amino acids
Sequence
(BLAST)
001: MSSPPPAAAA AMAVDDADDD QLASMSTEDI VRATRLLDNE TRVLKDELQR TNLEVESYKE KIKENQEKIK LNKQLPYLVG NIVEILEMNP EDEAEEDGAN
101: IDLDSQRKGK CVVLKTSTRQ TIFLPVIGLV DPEKLKPGDL VGVNKDSYLI LDTLPSEYDS RVKAMEVDEK PTEDYNDIGG LEKQIQELVE AIVLPMTHKD
201: RFQKLGIRPP KGVLLYGPPG TGKTLMARAC AAQTNATFLK LAGPQLVQMF IGDGAKLVRD AFQLAKEKSP CIIFIDEIDA IGTKRFDSEV SGDREVQRTM
301: LELLNQLDGF SSDERIKVIA ATNRADILDP ALMRSGRLDR KIEFPHPSEE ARARILQIHS RKMNVNPDVN FEELARSTDD FNGAQLKAVC VEAGMLALRR
401: DATEVTHEDF NEGIIQVQAK KKSSLNYYA
Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)
001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA
Arabidopsis Description
RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.