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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 18022940
nucleus: 23777608
plasma membrane: 27800704
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0803700-01
Os06t0173100-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G43010.1 Os02t0803700-01 AT3G05530.1 21798944
AT5G43010.1 Os06t0173100-01 AT3G05530.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0199900-01 Rice nucleus, plasma membrane 94.76 95.0
TraesCS7A01G378600.1 Wheat cytosol 94.26 94.5
TraesCS7B01G280400.1 Wheat cytosol, unclear 94.26 94.5
TraesCS7D01G375500.1 Wheat cytosol 94.26 94.5
EER88627 Sorghum cytosol 93.77 94.47
Zm00001d046539_P002 Maize cytosol, mitochondrion 93.27 93.97
KRH51796 Soybean cytosol 90.77 91.46
KRH61120 Soybean endoplasmic reticulum 90.77 91.46
GSMUA_Achr4P03720_001 Banana cytosol 90.77 91.46
KRH05868 Soybean cytosol, nucleus 90.52 90.98
Solyc01g109940.2.1 Tomato nucleus 90.27 90.95
VIT_03s0038g04350.t01 Wine grape cytosol 90.27 90.73
KRH15139 Soybean cytosol, endoplasmic reticulum, nucleus 90.27 90.73
VIT_18s0001g13090.t01 Wine grape cytosol 90.02 90.7
PGSC0003DMT400079514 Potato cytosol 90.02 90.7
GSMUA_AchrUn_... Banana cytosol 90.52 90.52
AT1G45000.1 Thale cress cytosol 90.02 90.48
CDY22373 Canola cytosol 89.28 89.72
CDX71534 Canola cytosol 89.28 89.72
Bra033655.1-P Field mustard cytosol 89.28 89.72
CDY02428 Canola cytosol, extracellular 89.03 89.47
Bra035338.1-P Field mustard cytosol 89.03 89.47
AT5G43010.1 Thale cress cytosol 88.78 89.22
CDY25226 Canola cytosol 88.78 89.22
GSMUA_Achr7P17620_001 Banana cytosol 90.52 88.54
HORVU7Hr1G090380.3 Barley cytosol 94.02 86.47
Solyc10g054040.1.1 Tomato cytosol, unclear 82.29 82.71
CDY20370 Canola cytosol 44.89 66.91
KRH51488 Soybean mitochondrion 67.83 64.3
CDY39032 Canola cytosol 38.4 61.35
KRH00031 Soybean plastid 49.88 57.97
CDY39033 Canola cytosol 58.6 57.88
CDY20371 Canola cytosol, plastid 58.35 53.18
Os02t0784700-00 Rice cytosol 23.44 50.0
Os06t0600100-01 Rice plasma membrane 42.39 40.19
Os02t0205300-01 Rice cytosol 42.14 39.86
Os04t0284600-01 Rice cytosol 34.66 38.94
Os06t0192600-01 Rice cytosol, nucleus, plasma membrane, plastid 40.4 38.03
Os02t0325100-01 Rice plastid 39.15 37.47
Bra008198.1-P Field mustard cytosol 58.6 37.42
Os02t0803700-01 Rice cytosol, nucleus, plastid 39.4 36.83
Os06t0173100-01 Rice cytosol, nucleus, plasma membrane 39.15 36.6
Os07t0691800-01 Rice cytosol, nucleus, plasma membrane, plastid 40.4 36.16
Os03t0298400-01 Rice plasma membrane 40.4 36.0
Os09t0560200-01 Rice cytosol, mitochondrion 32.92 29.46
Os05t0376200-00 Rice cytosol 25.44 26.09
Os10t0442600-01 Rice cytosol, nucleus, plasma membrane, plastid 11.72 24.1
Os04t0498800-01 Rice cytosol 30.67 21.28
Os03t0151800-02 Rice cytosol, extracellular, nucleus, plasma membrane, plastid 33.17 16.44
Os08t0556550-01 Rice cytosol 4.24 15.89
Os06t0109400-01 Rice cytosol 27.68 14.42
Os08t0413000-00 Rice mitochondrion 30.92 13.72
Os04t0617600-01 Rice cytosol 26.43 11.28
Os06t0600301-00 Rice plasma membrane 0.5 0.88
Os11t0220400-01 Rice mitochondrion 0.5 0.43
Os08t0556400-01 Rice endoplasmic reticulum, golgi, plasma membrane 0.25 0.14
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.4Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeGene3D:3.40.50.300EntrezGene:4341487
InterPro:AAA+_ATPaseEMBL:AK063158EMBL:AK066695InterPro:ATPase_AAA_CSInterPro:ATPase_AAA_coreProteinID:BAD35613.1
ProteinID:BAD36121.1ProteinID:BAF19948.1ProteinID:BAS98544.1ncoils:CoilProteinID:EAZ37594.1GO:GO:0000166
GO:GO:0000502GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005777
GO:GO:0005778GO:GO:0005829GO:GO:0006139GO:GO:0006625GO:GO:0006810GO:GO:0006950
GO:GO:0007031GO:GO:0008150GO:GO:0008152GO:GO:0008540GO:GO:0009056GO:GO:0009058
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016787GO:GO:0017025
GO:GO:0019538GO:GO:0030163GO:GO:0030433GO:GO:0031595GO:GO:0031597GO:GO:0036402
GO:GO:0042623GO:GO:0045899GO:GO:1901800EnsemblPlantsGene:Os06g0607800EnsemblPlants:Os06t0607800-01InterPro:P-loop_NTPase
PFAM:PF00004ScanProsite:PS00674InterPro:PSMC6PANTHER:PTHR23073PANTHER:PTHR23073:SF59UniProt:Q69Q32
SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242UniParc:UPI0000403855RefSeq:XP_015641387.1SEG:seg
Description
19S REGULATORY PARTICLE ATPASE SUBUNIT 4BSimilar to 26S proteasome regulatory complex subunit p42D. (Os06t0607800-01)
Coordinates
chr6:+:24182542..24186597
Molecular Weight (calculated)
44584.0 Da
IEP (calculated)
8.559
GRAVY (calculated)
-0.315
Length
401 amino acids
Sequence
(BLAST)
001: MAAEGEDAAA ARRRAAATDY RKKLLTCREL EARARTARDN LKNAKKDFGK TEDDLKSLQS VGQIIGEVLR PLDSERFIVK ASSGPRYVVG CRSKVDKEKL
101: IAGTRVVLDM TTLTIMRTLP REVDPVVYNM LHEDPGNVSY SAVGGLSDQI RELRESIELP LMNPKLFLRV GIKPPKGVLL YGPPGTGKTL LARAIASNID
201: ANFLKIVSSA IIDKYIGESA RLIREMFSYA REHQPCIIFM DEIDAIGGRR FSEGTSADRE IQRTLMELLN QLDGFDELGK VKMIMATNRP DVLDPALLRP
301: GRLDRKIEIP LPNEQSRMEV LKIHAAGIAK HGEIDYEAVV KLAEGFNGAD LRNVCTEAGM AAIRAERDYV IHEDFMKAVR KLNDAKKLES SAHYSADFGK
401: E
Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)
001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE
Arabidopsis Description
RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.