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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 6
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0511300-01
Os02t0133800-01
Os02t0146700-02
Os02t0199900-01
Os02t0205300-01
Os02t0325100-01
Os02t0739600-01
Os02t0739700-01
Os02t0803700-01
Os03t0180400-01
Os03t0214600-01
Os03t0576400-00
Os03t0851300-01
Os04t0444600-01
Os04t0485000-01
Os04t0608500-01
Os04t0661900-01
Os06t0167600-01
Os06t0173100-01
Os06t0176000-01
Os06t0177100-01
Os06t0246500-01
Os06t0600100-01
Os06t0600301-00
Os06t0607800-01
Os06t0699900-01
Os07t0435100-01
Os07t0614100-01
Os08t0224700-01
Os08t0431300-01
Os08t0529100-01
Os08t0550100-01
Os09t0326800-01
Os09t0408600-01
Os09t0505600-01
Os09t0515200-01
Os09t0541900-01
Os10t0362300-03
Os11t0615700-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G29040.1 Os04t0608500-01 AT1G04810.1 14623884
AT4G29040.1 Os08t0224700-01 AT1G04810.1 14623884
AT4G29040.1 Os08t0550100-01 AT1G20200.1 14623884
AT4G29040.1 Os09t0541900-01 AT1G20200.1 14623884
AT4G29040.1 Os03t0576400-00 AT1G29150.1 14623884
AT4G29040.1 Os04t0444600-01 AT1G29150.1 14623884
AT4G29040.1 Os02t0199900-01 AT1G45000.1 14623884
AT4G29040.1 Os06t0607800-01 AT1G45000.1 14623884
AT4G29040.1 Os11t0615700-01 AT1G53850.1 14623884
AT4G29040.1 Os09t0515200-01 AT1G56450.1 14623884
AT4G29040.1 Os02t0739600-01 AT1G59900.1 24846764
AT4G29040.1 Os02t0739700-01 AT1G59900.1 24846764
AT4G29040.1 Os06t0246500-01 AT1G59900.1 24846764
AT4G29040.1 Os07t0435100-01 AT1G64520.1 14623884
AT4G29040.1 Os08t0550100-01 AT1G75990.1 14623884
AT4G29040.1 Os09t0541900-01 AT1G75990.1 14623884
AT4G29040.1 Os03t0180400-01 AT2G05840.1 14623884
AT4G29040.1 Os07t0614100-01 AT2G05840.1 14623884
AT4G29040.1 Os02t0146700-02 AT2G20580.1 14623884
AT4G29040.1 Os06t0699900-01 AT2G20580.1 14623884
AT4G29040.1 Os09t0326800-01 AT2G20580.1 14623884
AT4G29040.1 Os04t0608500-01 AT2G32730.1 14623884
AT4G29040.1 Os08t0224700-01 AT2G32730.1 14623884
AT4G29040.1 Os02t0803700-01 AT3G05530.1 14623884
AT4G29040.1 Os06t0173100-01 AT3G05530.1 14623884
AT4G29040.1 Os11t0615700-01 AT3G14290.1 14623884
AT4G29040.1 Os06t0167600-01 AT3G22110.1 14623884
AT4G29040.1 Os06t0176000-01 AT3G22110.1 14623884
AT4G29040.1 Os06t0177100-01 AT3G22110.1 14623884
AT4G29040.1 Os08t0431300-01 AT3G25860.1 24846764
AT4G29040.1 Os09t0408600-01 AT3G25860.1 24846764
AT4G29040.1 Os08t0529100-01 AT3G60820.1 14623884
AT4G29040.1 Os09t0505600-01 AT3G60820.1 14623884
AT4G29040.1 Os04t0485000-01 AT4G24820.1 14623884
AT4G29040.1 Os02t0146700-02 AT4G28470.1 14623884
AT4G29040.1 Os06t0699900-01 AT4G28470.1 14623884
AT4G29040.1 Os09t0326800-01 AT4G28470.1 14623884
AT4G29040.1 Os04t0661900-01 AT5G05780.1 14623884
AT4G29040.1 Os02t0205300-01 AT5G19990.1 14623884
AT4G29040.1 Os06t0600100-01 AT5G19990.1 14623884
AT4G29040.1 Os06t0600301-00 AT5G19990.1 14623884
AT4G29040.1 Os02t0205300-01 AT5G20000.1 14623884
AT4G29040.1 Os06t0600100-01 AT5G20000.1 14623884
AT4G29040.1 Os06t0600301-00 AT5G20000.1 14623884
AT4G29040.1 Os03t0180400-01 AT5G35590.1 14623884
AT4G29040.1 Os07t0614100-01 AT5G35590.1 14623884
AT4G29040.1 Os10t0362300-03 AT5G35750.1 18642946
AT4G29040.1 Os02t0133800-01 AT5G42790.1 14623884
AT4G29040.1 Os01t0511300-01 AT5G45620.1 14623884
AT4G29040.1 Os03t0214600-01 AT5G45620.1 14623884
AT4G29040.1 Os02t0325100-01 AT5G58290.1 14623884
AT4G29040.1 Os03t0851300-01 AT5G64760.1 14623884
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os07t0691800-01 Rice cytosol, nucleus, plasma membrane, plastid 97.56 97.99
TraesCS4D01G190600.1 Wheat cytosol, golgi 97.33 97.33
HORVU4Hr1G055060.1 Barley cytosol 97.33 97.33
TraesCS4B01G189200.1 Wheat cytosol 97.11 97.11
TraesCS4A01G115000.1 Wheat cytosol 97.11 97.11
Zm00001d028801_P001 Maize cytosol, extracellular 96.0 96.86
GSMUA_Achr4P05850_001 Banana cytosol 89.56 95.05
KRG95799 Soybean cytosol, nucleus 93.33 94.17
GSMUA_Achr4P05840_001 Banana cytosol 88.0 94.06
KRH67524 Soybean nucleus 93.11 93.95
KRH32292 Soybean cytosol, nucleus 92.22 93.68
KRH19693 Soybean cytosol 92.22 93.68
VIT_07s0005g05160.t01 Wine grape cytosol 92.44 93.48
Solyc06g083620.2.1 Tomato nucleus, plastid 91.56 92.79
AT4G29040.1 Thale cress cytosol 91.33 92.78
PGSC0003DMT400040872 Potato cytosol 91.33 92.57
AT2G20140.1 Thale cress cytosol 91.11 92.55
CDX97472 Canola cytosol 91.33 92.36
PGSC0003DMT400051744 Potato cytosol 91.11 92.34
CDY35245 Canola cytosol 90.67 92.1
Bra011079.1-P Field mustard cytosol 90.67 92.1
Bra010342.1-P Field mustard cytosol 90.89 91.91
CDY14224 Canola cytosol 90.89 91.91
CDX92914 Canola cytosol, extracellular 90.44 91.87
CDY06847 Canola cytosol 90.44 91.87
CDY59958 Canola cytosol 62.22 76.92
Bra024165.1-P Field mustard cytosol 55.11 76.78
Os02t0784700-00 Rice cytosol 21.11 50.53
Os02t0325100-01 Rice plastid 41.56 44.63
Os02t0205300-01 Rice cytosol 39.78 42.22
Os02t0803700-01 Rice cytosol, nucleus, plastid 39.78 41.72
Os06t0173100-01 Rice cytosol, nucleus, plasma membrane 39.78 41.72
Os06t0600100-01 Rice plasma membrane 39.11 41.61
Os02t0199900-01 Rice nucleus, plasma membrane 36.89 41.5
Os04t0284600-01 Rice cytosol 32.89 41.46
Os06t0607800-01 Rice nucleus 36.0 40.4
Os06t0192600-01 Rice cytosol, nucleus, plasma membrane, plastid 37.33 39.44
Os09t0560200-01 Rice cytosol, mitochondrion 35.78 35.94
Os05t0376200-00 Rice cytosol 23.11 26.6
Os10t0442600-01 Rice cytosol, nucleus, plasma membrane, plastid 10.22 23.59
Os04t0498800-01 Rice cytosol 28.0 21.8
Os03t0151800-02 Rice cytosol, extracellular, nucleus, plasma membrane, plastid 28.67 15.95
Os06t0109400-01 Rice cytosol 25.33 14.81
Os08t0556550-01 Rice cytosol 3.33 14.02
Os08t0413000-00 Rice mitochondrion 27.78 13.83
Os04t0617600-01 Rice cytosol 26.67 12.77
Os11t0220400-01 Rice mitochondrion 3.11 2.99
Os06t0600301-00 Rice plasma membrane 1.33 2.65
Os08t0556400-01 Rice endoplasmic reticulum, golgi, plasma membrane 0.22 0.14
Protein Annotations
Gene3D:1.10.8.60MapMan:19.2.6.2.1.2Gene3D:2.40.50.140InterPro:26S_Psome_P45-likeInterPro:26S_subunit_4Gene3D:3.40.50.300
EntrezGene:4332553InterPro:AAA+_ATPaseEMBL:AB037154ProteinID:ABF95461.1EMBL:AK069811InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_coreProteinID:BAF11757.1ProteinID:BAS83742.1GO:GO:0000166GO:GO:0000502GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006139GO:GO:0006508
GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008540GO:GO:0009056
GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0017025GO:GO:0019538
GO:GO:0030163GO:GO:0030433GO:GO:0031595GO:GO:0031597GO:GO:0036402GO:GO:0045899
GO:GO:1901800EnsemblPlantsGene:Os03g0298400EnsemblPlants:Os03t0298400-01InterPro:P-loop_NTPasePFAM:PF00004ScanProsite:PS00674
PANTHER:PTHR23073PANTHER:PTHR23073:SF42UniProt:Q8W422SMART:SM00382SUPFAM:SSF52540TIGRFAMs:TIGR01242
UniParc:UPI00000A8217RefSeq:XP_015632801.1SEG:seg:::
Description
19S REGULATORY PARTICLE ATPASE SUBUNIT 2BSimilar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a). (Os03t0298400-01);Similar to 26S protease regulatory subunit 4 homolog. (Os03t0298400-02)
Coordinates
chr3:+:10462452..10466088
Molecular Weight (calculated)
49717.2 Da
IEP (calculated)
6.073
GRAVY (calculated)
-0.388
Length
450 amino acids
Sequence
(BLAST)
001: MGQGTPGGMG KQGGLPGDRK PGDGGAGDKK DRKFEPPAAP SRVGRKQRKQ KGPEAAARLP AVAPLSKCRL RLLKLERVKD YLLMEEEFVV SQERLRPSED
101: KTEEDRSKVD DLRGTPMSVG SLEEIIDESH AIVSSSVGPE YYVGILSFVD KDQLEPGCAI LMHNKVLSVV GILQDEVDPM VSVMKVEKAP LESYADIGGL
201: DAQIQEIKEA VELPLTHPEL YEDIGIRPPK GVILYGEPGT GKTLLAKAVA NSTSATFLRV VGSELIQKYL GDGPKLVREL FRVADDLSPS IVFIDEIDAV
301: GTKRYDAHSG GEREIQRTML ELLNQLDGFD SRGDVKVILA TNRIESLDPA LLRPGRIDRK IEFPLPDIKT RRRIFQIHTS KMTLADDVNL EEFVMTKDEF
401: SGADIKAICT EAGLLALRER RMKVTHADFK KAKEKVMFKK KEGVPEGLYM
Best Arabidopsis Sequence Match ( AT4G29040.1 )
(BLAST)
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Arabidopsis Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.